| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 3487378 | 155 (0.590) | 6 (0.020) | 3/250 | NT | 3.8% | intergenic (‑36/‑473) | tagD/EO946_RS17965 | glycerol‑3‑phosphate cytidylyltransferase/WecB/TagA/CpsF family glycosyltransferase |
| ? | NZ_CP034943 | 3487388 = | 149 (0.580) | intergenic (‑46/‑463) | tagD/EO946_RS17965 | glycerol‑3‑phosphate cytidylyltransferase/WecB/TagA/CpsF family glycosyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATCCTACGATTAAGTAATCACCCAGATTTTTCGCTCTTTCCAGAAGCTTCATATGTCCGTAGTGAAATAAATCAAATGTTCCGTACGTTATCACTTTCTTCATTAGATAACATCACCTTCCAACCGTTTTCAACTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/3487239‑3487378‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAAACCAAAAACCTTAACAGATCGTTTATAATTTCGACATATTTTTTACGTACCATTAATAATGAACAATAATAGCATAAGTTCCTATAAAAGTTAAGGCTCTTTAAAAATGTAAATCATCAGCATTTTTTGGTATCA > NZ_CP034943/3487388‑3487526 AATCCTACGATTAAGTAATCACCCAGATTTTTCGCTCTTTCCAGAAGCTTCATATGTCCGTAGTGAAATAAATCAAATGTTCCGTACGTTATCACTTTCTTCATTAGATAACATCACCTTCCAACCGTTTTCAACTGAGA > 2:2673580/1‑140AATCCTACGATTAAGTAATCACCCAGATTTTTCGCTCTTTCCAGAAGCTTCATATGTCCGTAGTGAAATAAATCAAATGTTCCGTACGTTATCACTTTCTTCATTAGATAACATCACCTTCCAACCGTTTTCAACTGAGA > 2:950109/1‑140 TCATATGTCCATAGTGAAATAAATCAAACATTCCGTACG‑TATCACTTTCTTCATTAGATAACATCACCTTCCAACCTTTTCCAACTTAGAAAAAACAAAAATCCTTAACTGATTGTTTATCATTTCGACATATTTTTTAC > 1:1402399/1‑140 TCATATGTCCATAGTGAAATAAATCAAACATTCCGTACG‑TATCACTTTCTTCATTAGATAACATCACCTTCCAACCTTTTCCAACTTAGAAAAAACAAAAATCCTTAACTGATTGTTTATCATTTCGACATATTTTTTAC > 1:1535649/1‑140 AAATAAATCAAACATTCCGTACG‑TATCACTTTCTTCATTAGATAACATCACCTTCCAACCTTTTCCAACTTAGAAAAAACAAAAATCCTTAACTGATTGTTTATCATTTCGACATATTTTTTACGTTCCATTAATAA > 1:1209877/1‑137 AAATAAATCAAACATTCCGTACG‑TATCACTTTCTTCATTAGATAACATCACCTTCCAACCTTTTCCAACTTAGAAAAAACAAAAATCCTTAACTGATTGTTTATCATTTCGACATATTTTTTACGTTCCATTAATAA > 1:1210105/1‑137 AAATAAATCAAACATTCCGTACG‑TATCACTTTCTTCATTAGATAACATCACCTTCCAACCTTTTCCAACTTAGAAAAAACAAAAATCCTTAACTGATTGTTTATCATTTCGACATATTTTTTACGTTCCATTAATAA < 2:1209877/137‑1 AAATAAATCAAACATTCCGTACG‑TATCACTTTCTTCATTAGATAACATCACCTTCCAACCTTTTCCAACTTAGAAAAAACAAAAATCCTTAACTGATTGTTTATCATTTCGACATATTTTTTACGTTCCATTAATAA < 2:1210105/137‑1 AAAAAACCAAAAACCTTAACAGATCGTTTATAATTTCGACATATTTTTTACGTACCATTAATAATGAACAATAATAGCATAAGTTCCTATAAAAGTTAAGGCTCTTTAAAAATGTAAATCATCAGCATTTTTTGGTATCA < 1:234366/140‑1 AATCCTACGATTAAGTAATCACCCAGATTTTTCGCTCTTTCCAGAAGCTTCATATGTCCGTAGTGAAATAAATCAAATGTTCCGTACGTTATCACTTTCTTCATTAGATAACATCACCTTCCAACCGTTTTCAACTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/3487239‑3487378‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAAACCAAAAACCTTAACAGATCGTTTATAATTTCGACATATTTTTTACGTACCATTAATAATGAACAATAATAGCATAAGTTCCTATAAAAGTTAAGGCTCTTTAAAAATGTAAATCATCAGCATTTTTTGGTATCA > NZ_CP034943/3487388‑3487526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |