BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	166199 =	228 (1.560)	4 (0.030) +A	3/244	NT	1.8%	intergenic (+4/‑168)	EO946_RS00985/EO946_RS00990	tRNA‑Ala/16S ribosomal RNA
*	?	NZ_CP034943	= 171201	220 (1.540)	4 (0.030) +A	3/244	NT	1.8%	intergenic (+18/‑167)	rrf/EO946_RS01005	5S ribosomal RNA/16S ribosomal RNA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 261 total aligned reads displayed.

GCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGCA  >  NZ_CP034943/166060‑166337

gCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAt                                                                                                                                            >  1:2283553/1‑140 (MQ=33)

 cacaTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAtt                                                                                                                                           >  2:1838726/1‑140 (MQ=33)

 cacaTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAtt                                                                                                                                           >  2:1475025/1‑140 (MQ=33)

 cacaTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAtt                                                                                                                                           >  1:301118/1‑140 (MQ=33)

 cacaTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAtt                                                                                                                                           >  2:25419/1‑140 (MQ=33)

    aTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCTGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAttttt                                                                                                                                        >  2:2049928/1‑140 (MQ=21)

    aTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAttttt                                                                                                                                        >  2:579231/1‑140 (MQ=34)

    aTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAttttt                                                                                                                                        >  1:419776/1‑140 (MQ=34)

    aTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAttttt                                                                                                                                        >  1:461926/1‑140 (MQ=34)

      ggTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGTGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAATTTTTaa                                                                                                                                      >  1:1214364/1‑140 (MQ=14)

      ggTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaa                                                                                                                                      >  2:1653886/1‑140 (MQ=37)

      ggTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGGCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaa                                                                                                                                      >  1:157422/1‑140 (MQ=37)

        tttGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaaaa                                                                                                                                    <  1:894465/140‑1 (MQ=38)

           gggACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAg                                                                                                                                 >  2:642436/1‑140 (MQ=39)

                cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                                            >  1:1709549/1‑140 (MQ=39)

                cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                                            >  1:1983711/1‑140 (MQ=39)

                cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                                            >  2:2388386/1‑140 (MQ=39)

                cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                                            >  2:1016692/1‑140 (MQ=39)

                 aTGTGGTCTCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGTGGCAGTAGCTAAGCTGGGAGATCGCCTGCTTAGCACGCATGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGttgttg                                                                                                                           >  2:1156403/1‑140 (MQ=14)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:614679/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:1759676/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:2143269/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:1262843/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:2264901/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:450492/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:1515189/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:1314316/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:1842928/1‑140 (MQ=39)

                  tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:891716/1‑140 (MQ=39)

                       tCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTg                                                                                                                     >  1:1865250/1‑140 (MQ=40)

                        cGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTga                                                                                                                    >  1:849819/1‑140 (MQ=40)

                             gTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGaagaag                                                                                                               <  2:288261/140‑1 (MQ=255)

                               tCGAATCCTGTCTTCCCGACCCTGTTCATGGGGCCTTAGCTCAGCTGGGAGAGCTCCTGCTTTGGACGGAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:1743847/140‑1 (MQ=14)

                               tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:1657455/140‑1 (MQ=255)

                               tCGAATCCTGTCTTCCCGACCAGTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:38490/140‑1 (MQ=255)

                               tCGAATCCTGTCTACCCGACCATTGTCATGGGGCCTTCGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:1873085/140‑1 (MQ=255)

                                cGAATCCTGTCTTCCCGACCCTTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGGTTTGCACGCAGGAGGTCAGCGGTTCGAGCCAGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagcag                                                                                                            <  2:2091876/140‑1 (MQ=255)

                                cGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagcag                                                                                                            >  1:2371035/1‑140 (MQ=255)

                                cGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagcag                                                                                                            >  1:1790560/1‑140 (MQ=255)

                                cGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagcag                                                                                                            >  1:716257/1‑140 (MQ=255)

                                 gAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagcagc                                                                                                           <  1:1871995/140‑1 (MQ=255)

                                   ttcccataccgaacacggaagttaagctcttcagcgccgatggtagtcgggggtttccccctgtgagagtaggacgccgccaagcaattgcacattagtgtaatTTTTTAAAAAAGTTATTGactttgaagaagtgacat                                                                                                         <  2:533649‑M1/36‑7 (MQ=255)

                                       tGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                                     <  2:1566700/140‑1 (MQ=255)

                                       tGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                                     <  2:701510/140‑1 (MQ=255)

                                       tGTCTTCCCGAACATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGACTGCTTTGCACGAAGCAGCTCAGCGGTTCGACACAGCTAGGCTCCACCAAAATTATTAAAAAAGTTGTTGACTATGAAGAAGCAGAgtagta                                                                                                     >  2:1315309/1‑140 (MQ=14)

                                       ggTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCGAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                                     <  1:279674/139‑1 (MQ=255)

                                        gTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTgaag                                                                                                                  >  2:1388876/1‑126 (MQ=255)

                                        gTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTgaag                                                                                                                  <  1:1388876/126‑1 (MQ=255)

                                        gTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTgaag                                                                                                                  >  2:1049767/1‑126 (MQ=255)

                                        gTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTgaag                                                                                                                  <  1:1049767/126‑1 (MQ=255)

                                         tCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGtata                                                                                                   >  2:1714969/1‑140 (MQ=255)

                                         tCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGGTGTTGACTTTGAAGAAGCAGCGTTGtata                                                                                                   >  2:90919/1‑140 (MQ=255)

                                                 aCCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  1:1656950/122‑1 (MQ=255)

                                                   cATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGt                                                                                         <  2:1031316/140‑1 (MQ=255)

                                                   cATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGt                                                                                         >  2:2319488/1‑140 (MQ=255)

                                                   cATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGt                                                                                         <  2:1790560/140‑1 (MQ=255)

                                                      tttCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGc                                                                                      >  2:1372006/1‑140 (MQ=255)

                                                                       tCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATaa                                                                     <  1:19108/140‑1 (MQ=255)

                                                                          gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATCAAGTTGCTTTAACAAAGCGAATAAACg                                                                  >  1:986875/1‑140 (MQ=255)

                                                                          gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACg                                                                  >  1:1822352/1‑140 (MQ=255)

                                                                          gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGGATACTAATAAAGTTGCTTTAACAAAGCGAATAAACg                                                                  >  1:683691/1‑140 (MQ=255)

                                                                           cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGa                                                                 >  2:819834/1‑140 (MQ=255)

                                                                           cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGGTGTATACTACTAAAGTTGCTTTAACAAAGCGAATAAACGa                                                                 >  1:1367511/1‑140 (MQ=255)

                                                                             gggAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGaaa                                                               <  1:562686/140‑1 (MQ=255)

                                                                             gggAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGaaa                                                               <  1:247641/140‑1 (MQ=255)

                                                                              ggAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAAt                                                              <  1:928227/140‑1 (MQ=255)

                                                                                   gcgcCTGCTTTGCACGCAGGAGGTCAGCTGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCTTTGTATACTAATAAATTTGCTTTAACAAAGAGAATAAACGAAATGATCt                                                         >  2:1071823/1‑140 (MQ=255)

                                                                                   gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCCAAATTTTTAAAAAAGTTGTTGACTGTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCt                                                         >  2:730698/1‑140 (MQ=255)

                                                                                   gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAACTGATCt                                                         >  1:437092/1‑140 (MQ=255)

                                                                                   gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCt                                                         >  1:220638/1‑140 (MQ=255)

                                                                                   gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCt                                                         >  1:952862/1‑140 (MQ=255)

                                                                                    cgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCtt                                                        >  2:1609636/1‑140 (MQ=255)

                                                                                     gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCttt                                                       <  2:93680/140‑1 (MQ=255)

                                                                                               cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                                     >  2:1129585/1‑84 (MQ=255)

                                                                                               cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTaaa                                             <  1:2095142/140‑1 (MQ=255)

                                                                                               cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTaaa                                             <  1:2134113/140‑1 (MQ=255)

                                                                                               cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTaaa                                             <  1:1130881/140‑1 (MQ=255)

                                                                                                aCGCAGGATGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAATTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAAc                                            <  1:1271884/140‑1 (MQ=255)

                                                                                                 gtgagagtaggacgccgccaagcaattgcacattagtgtaatTTTTTAAAAAAGTTATTGACTTTGAAGAAGTGACATTGTATACTCATAAAGTTGCTTTAACAAAGCGTACAAAAAAAATGATCTTTGAAAACTAAACa                                           <  2:1581207‑M1/98‑1 (MQ=255)

                                                                                                    aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACACGa                                        >  1:1758106/1‑140 (MQ=255)

                                                                                                    aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        <  2:953914/140‑1 (MQ=255)

                                                                                                    aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        >  1:2313155/1‑140 (MQ=255)

                                                                                                    aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        <  2:345172/140‑1 (MQ=255)

                                                                                                    aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        >  1:651128/1‑140 (MQ=255)

                                                                                                      gaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACa                                      <  2:548502/140‑1 (MQ=255)

                                                                                                            aGCGGTTCGAGCCCGCTAGGCTCCACCAACATTGTGAAAAAAGTTGTTGACTTTGTAGAAGCTGCGTTGTAGTCTAATGAAGTTGCTTTATCATAGCGAATAGAGGACCTGCTCTTTGTCAACTAAACACGACAAATCGt                                >  2:616825/1‑140 (MQ=9)

                                                                                                              cGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTAc                              >  1:1001016/1‑140 (MQ=255)

                                                                                                                gTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCt                            >  1:1102168/1‑140 (MQ=255)

                                                                                                                   cGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGtt                         >  1:2020199/1‑140 (MQ=255)

                                                                                                                      gCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAAGAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAAt                      >  2:2274471/1‑140 (MQ=255)

                                                                                                                                  ccaccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTtata          <  1:2388386/140‑1 (MQ=255)

                                                                                                                                   caccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATaa         >  1:498448/1‑140 (MQ=255)

                                                                                                                                    accaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATaaa        >  2:2359715/1‑140 (MQ=40)

                                                                                                                                       aaaaTTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATc     <  2:882744/140‑1 (MQ=38)

                                                                                                                                        aaaTTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCg    >  2:1845138/1‑140 (MQ=37)

                                                                                                                                        aaaTTTTTAAAAAAGTTGTTGACGTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGACATGATCTTTGAAAACTAAACAAGACCAAACGTACCTGTTAATTCATTTTTTAGAAAATCg    >  2:188548/1‑140 (MQ=255)

                                                                                                                                          aTTTTTACAAAAGTTGTTGACTTTTAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTAGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGca  <  2:1214364/140‑1 (MQ=16)

                                                                                                                                          aTTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATCCTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGca  <  2:1816765/140‑1 (MQ=25)

                                                                                                                                          aTTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGca  <  2:2098749/140‑1 (MQ=35)

                                                                                                                                          aTTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTCTATAAAATCGca  <  2:220638/140‑1 (MQ=25)

GCACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGCA  >  NZ_CP034943/166060‑166337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.