BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 2653801	327 (1.280)	3 (0.010)	3/246	NT	0.94%	coding (466/1161 nt)	safA	spore coat assembly protein SafA
*	?	NZ_CP034943	2653808 =	314 (1.260)	3 (0.010)	3/246	NT	0.94%	coding (459/1161 nt)	safA	spore coat assembly protein SafA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 341 total aligned reads displayed.

CCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC  >  NZ_CP034943/2653669‑2653946

ccGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTgg                                                                                                                                            <  2:2750792/140‑1 (MQ=255)

 cGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGt                                                                                                                                           >  2:3968759/1‑140 (MQ=255)

  ggCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCGACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTc                                                                                                                                          <  1:2227720/140‑1 (MQ=255)

    cATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCtt                                                                                                                                        <  2:64512/140‑1 (MQ=255)

       atgcGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCa                                                                                                                                     <  2:3260196/137‑1 (MQ=255)

       atTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCa                                                                                                                                     <  1:78104/140‑1 (MQ=255)

       atTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTATGGCATATTAGGCATATTCGGATACTTTGCATTTTCCATATTACTCAGAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCa                                                                                                                                     <  2:886359/140‑1 (MQ=255)

       agtCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCa                                                                                                                                     <  2:56774/138‑1 (MQ=255)

         tCGTAAATGTGTTATGAACGTTTTCTTCTTCCATACCGACTACCTCTGGCGCCTTTGGCATATTAGGAATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtg                                                                                                                                   <  2:496591/140‑1 (MQ=255)

         tCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtg                                                                                                                                   <  2:2231504/140‑1 (MQ=255)

          cGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCGTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtgt                                                                                                                                  >  2:1837999/1‑140 (MQ=255)

           ggAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtgtg                                                                                                                                 <  2:147035/140‑1 (MQ=255)

           cgAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtgtg                                                                                                                                 <  2:1053119/139‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  2:1617090/140‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCGTCTTCCAGACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCGATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  2:3161112/140‑1 (MQ=255)

             aaCTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGAt                                                                                                                               <  1:2684388/140‑1 (MQ=255)

                 gtgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACat                                                                                                                           <  2:4216804/140‑1 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATATCCTCCTGTTGTGGACATTGATCTTGGTCTTGCATGTGATACaga                                                                                                                          >  1:552155/1‑138 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtg                                                                                                                                   >  1:2568762/1‑131 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                >  1:4185353/1‑134 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:3300786/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:3649673/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:2871651/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:46200/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  2:1119856/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:4040252/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGCCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:160762/1‑140 (MQ=255)

                  tgtcATGAACGTTTTCTTATTCCATACCTCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATCTGAGTCATAGCCTCCTGTTGTGGAAATGGATCGGGGTCTTGCATGTGATACata                                                                                                                          >  1:1305114/1‑140 (MQ=255)

                    tgatgaACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTTTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATg                                                                                                                        <  2:2537142/140‑1 (MQ=255)

                    tgatgaACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATg                                                                                                                        <  1:1818221/140‑1 (MQ=255)

                    tgatgaACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATg                                                                                                                        <  2:3648277/140‑1 (MQ=255)

                    tgatgaACGTTTTATACTTCCATACCGCCTACCACTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATATCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATg                                                                                                                        <  1:3004813/140‑1 (MQ=255)

                       tgaACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATc                                                                                                                     >  2:2721210/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTTGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGtttttt                                                                                             >  2:4001701/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGtttttt                                                                                             >  2:4141838/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGtttttt                                                                                             >  1:1037786/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGtttttt                                                                                             >  2:3218593/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGtttttt                                                                                             >  2:2845590/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTGCCGTCAGGATGtttttt                                                                                             >  2:1768749/1‑140 (MQ=255)

                                                 tACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCg                                                                                           <  2:2906775/140‑1 (MQ=255)

                                                  aCCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCgg                                                                                          <  1:1710673/140‑1 (MQ=255)

                                                  aCCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCgg                                                                                          <  1:2721210/140‑1 (MQ=255)

                                                     tctGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGctc                                                                                       <  1:1413075/140‑1 (MQ=255)

                                                       tGGCGCCTTTGGCATATTAGGCATATTCTGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATGTATATTTTAGTCATGTTGTTTTTTAggatact                                                                                     <  2:799107/140‑6 (MQ=255)

                                                       tGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGctcct                                                                                     <  2:248293/140‑1 (MQ=255)

                                                       tGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCGGTTGTGGAAATTGATCTGGGTCTTGCAGGTGATACCTATGATCCAGATTTCCGTCATGATGTTGTTTCGGctcct                                                                                     >  2:1269644/1‑140 (MQ=255)

                                                        ggCGCCTTTGGCATATGAGGCATATTCGAATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGGGGAAATTGATCTTGGTCTTGCATGTGATACATATGAACCATATTTCCGTCATGATGTTTTTTCGGctcctc                                                                                    <  1:92300/140‑1 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   >  1:2839227/1‑140 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTGGTGGAAATTGAACTTGGTCTTGCATGTGATACATCTGATCCATATTTCCGTCAGGATGTGTTTTCGGCtcctcc                                                                                   >  2:3862687/1‑140 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATAGTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   >  1:2939679/1‑140 (MQ=255)

                                                             cTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGtt                                                                               <  1:12499/140‑1 (MQ=255)

                                                             cTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGtt                                                                               <  1:3968759/140‑1 (MQ=255)

                                                              tttGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   <  2:4101121/135‑1 (MQ=255)

                                                              tttGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   >  1:195479/1‑135 (MQ=255)

                                                              tttGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   <  2:195479/135‑1 (MQ=255)

                                                              tttGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGttt                                                                              >  2:234439/1‑140 (MQ=255)

                                                                   cATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         <  1:3850490/140‑1 (MQ=255)

                                                                   cATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         <  1:2419176/140‑1 (MQ=255)

                                                                   cATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         <  1:2159122/140‑1 (MQ=255)

                                                                    atatTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAggggg                                                                        <  2:1622494/140‑1 (MQ=255)

                                                                         aGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGAcc                                                                   <  2:2307566/140‑1 (MQ=255)

                                                                         aGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGAcc                                                                   <  2:3312147/140‑1 (MQ=255)

                                                                               atTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCt                                                             <  2:3398676/140‑1 (MQ=255)

                                                                                    gATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGaaa                                                        <  2:3300786/140‑1 (MQ=255)

                                                                                     aTAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGaaaa                                                       >  1:3774493/1‑140 (MQ=255)

                                                                                      tAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAg                                                      <  2:2089354/140‑1 (MQ=255)

                                                                                      tAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAg                                                      <  2:2586552/140‑1 (MQ=255)

                                                                                      tAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCGTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAg                                                      <  1:3174664/140‑1 (MQ=255)

                                                                                      tAAGTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAg                                                      <  2:354210/140‑1 (MQ=255)

                                                                                         tttGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTg                                                   >  1:2104741/1‑140 (MQ=255)

                                                                                            gCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGttt                                                <  2:3710956/140‑1 (MQ=255)

                                                                                            gCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGttt                                                <  2:1177012/140‑1 (MQ=255)

                                                                                            gCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGAGACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGttt                                                <  2:181113/140‑1 (MQ=255)

                                                                                             cATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtc                                               >  1:1555125/1‑140 (MQ=255)

                                                                                               ttttCCATTTTACTCATAGCCTCATGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcat                                             <  2:1241642/140‑1 (MQ=255)

                                                                                                 ttCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatat                                           <  2:3078420/140‑1 (MQ=255)

                                                                                                  tCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatatc                                          >  1:98454/1‑140 (MQ=255)

                                                                                                         tACTCATATCCTCCTGTTGTTGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCAtaataa                                   <  1:2521802/140‑1 (MQ=255)

                                                                                                         tACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCAtaataa                                   <  1:1181041/140‑1 (MQ=255)

                                                                                                            tCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCg                                >  2:828218/1‑140 (MQ=255)

                                                                                                              aTAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGtt                              <  1:730811/140‑1 (MQ=255)

                                                                                                                   ctcctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACAt                         <  2:2617818/140‑1 (MQ=255)

                                                                                                                    tcctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATc                        <  2:2809114/140‑1 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAg                                                                >  2:1535707/1‑99 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCa                       >  1:184307/1‑140 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCa                       >  1:1667651/1‑140 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCa                       >  1:3092278/1‑140 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCa                       >  1:3213425/1‑140 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCAGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCa                       >  2:2635799/1‑140 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATAAATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCa                       >  2:201695/1‑140 (MQ=255)

                                                                                                                      ctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAg                      >  1:3410403/1‑140 (MQ=255)

                                                                                                                         ttgtGGAAATTGATCTTGGTCTTGCATGTGATTCATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCtt                   <  1:665633/140‑1 (MQ=255)

                                                                                                                         ttgtGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATTATGTTTTTTCTTATAATAATTTTTAGTTGGAGACAAAGGCTTGAAAAGATGTTTTATATAATAATTATCGTTGACATcttgtt                   <  2:1918175/140‑6 (MQ=255)

                                                                                                                            tgGAAATTGATCTTGGTCTTGCATGTGATACATATTTTCCTTTGTTCGGTCATGTTGTTTTTTCGGCTCCTCCGGTTGAGGGGGCGCCCAAGGCTGGACAGGCTGTTTCATATCCTAATTATCGTTCACATCTGCTTctg                >  2:3451054/1‑138 (MQ=255)

                                                                                                                            tgGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTCTTTCATATCATAATAATCGTTCACATCAGCTTCAg                >  1:3575440/1‑140 (MQ=255)

                                                                                                                               aaaTTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGAt             <  1:234439/140‑1 (MQ=255)

                                                                                                                                aaTTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATa            >  2:3040919/1‑140 (MQ=255)

                                                                                                                                   tGATCTTGGTCTTGCTTGTGATACATATTATCCATATTTCCGGCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGTGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGGTCACATCAGCTTCAGGATacac         >  2:786318/1‑140 (MQ=255)

                                                                                                                                   tGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATacac         >  1:1524583/1‑140 (MQ=255)

                                                                                                                                         tgGTCTTGCATGTGATACATATGATCCATATGTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTc   <  2:3925307‑M2/138‑1 (MQ=255)

CCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC  >  NZ_CP034943/2653669‑2653946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.