| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 3376760 | 644 (1.420) | 8 (0.020) | 3/250 | NT | 1.3% | intergenic (‑125/+94) | trxB/cwlO | thioredoxin‑disulfide reductase/peptidoglycan DL‑endopeptidase CwlO |
| ? | NZ_CP034943 | 3376771 = | 607 (1.340) | intergenic (‑136/+83) | trxB/cwlO | thioredoxin‑disulfide reductase/peptidoglycan DL‑endopeptidase CwlO | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACCATCTTTTCAAGTTTGGGCTCTTTCTTATATGATAAGAATCCCCATCAAACGTATTCCTTACCCATATCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/3376650‑3376760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCACGATTAAATGTATTGTAAAAGGGTATACATGTTAATAAAGAAAGAGCCTTCTGTGTATAGAAGGCCCTTGTCTTATTTATTATTGAACAACACGTCTTACAACGCCTTTAAATGCTTTTTTCCAGTAAACGT > NZ_CP034943/3376771‑3376906 AAACCATCTTTTCAATTTTGGGCTCTTTCTTAGAAGATAAGAATCCCCATCAAACGTATTCCTTACCAATATCCTATAAAATCTCAGGGTGATACGCGATTTTTTTGGTCAA‑CACGATTAAATGTATTCGAAAAGGGTAT > 1:3963750/1‑140AAACCATCTTTTCAAGTTTGGGCTCTTTCTTATAAGATAAGAATCGCCATCAAACGTATTCCTTACCCATATCCTATAAAATCTCATGGTGATACGCTCTTTTATTGCTCAA‑CACGAGTAAATGTATTCGAAAAGGGTAg > 1:2733694/1‑139AAACCATCTTTTCAAGTTTGGGCTCTTTCTTATAAGATAAGAATCCCCATCAAACGTATTCCTTACCCATCTCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCAA‑CACGATTAAATGTATTCGAACAGGGTAT > 1:5234542/1‑140AAACCATCTTTTCAAGTTTGGGCTCTTTCTTATAAGATAAGAATCCCCATCAAACGTATTCCTTACCCATATCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCAA‑CACGATTAAATGTATTCGAAAAGGGTAT > 1:4619446/1‑140AAACCATCTTTTCAAGTTTGGGCTCTTTCTTATAAGATAAGAATCCCCATCAAACGTATTCCTTACCCATATCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCAA‑CACGATTAAATGTATTCGAAAAGGGTAT > 1:7717314/1‑140 CTCTTTCTTATAAGATAAGAATCCCCATCAAACGTATTCCTTACCCATATCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCAA‑CACGATTAAATGTATTCGAAAAGGGTAT‑‑ATGTTAATAAAGAAAGAGCCTT < 2:1940407/140‑1 ACCCATATCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCAA‑CACGATTAAATGTATTCGAAAAGGGTAT‑‑ATGTTAATAAAGAAAGAGCCTTCTGTTTATAGAAGGCCCTTGTCATATTTATTATTGAACAACA < 2:2442916/140‑1 ACCCATATCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCAA‑CACGATTAAATGTATTCGAAAAGGGTAT‑‑ATGTTAATAAAGAAAGAGCCTTCTGTTTATAGAAGGCCCTTGTCATATTTATTATTGAACAACA < 2:453855/140‑1 tatAATCACGATTAAATGTATTGTAAAAGGGTAGACATGTTAATACAGAAAGAGCCTTCTGTGTAGAGAAGGCCCTTGTCTTATTTATTATTGAACAACACGTCTTACAACGCCTTTAAATGCTTTTTTCCAGTAAACGT < 2:642794/137‑1 AAACCATCTTTTCAAGTTTGGGCTCTTTCTTATATGATAAGAATCCCCATCAAACGTATTCCTTACCCATATCCTATAAAATCTCATGGTGATACGCTATTTTTTTGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/3376650‑3376760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCACGATTAAATGTATTGTAAAAGGGTATACATGTTAATAAAGAAAGAGCCTTCTGTGTATAGAAGGCCCTTGTCTTATTTATTATTGAACAACACGTCTTACAACGCCTTTAAATGCTTTTTTCCAGTAAACGT > NZ_CP034943/3376771‑3376906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |