New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP034943 3592725 =240 (0.760)5 (0.020) 3/232 NT 2.2% coding (424/702 nt) urtE urea ABC transporter ATP‑binding subunit UrtE
?NZ_CP034943 = 3592721 233 (0.810)coding (428/702 nt) urtE urea ABC transporter ATP‑binding subunit UrtE
Rejected: Frequency below/above cutoff threshold.

CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/3592873‑3592725
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT  <  NZ_CP034943/3592721‑3592586
                                                                                                                                                                                                                                                                                             
cggTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGACTGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC                                                                                                                                                   <  2:4070604/137‑1
CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC                                                                                                                                                   <  2:4066766/140‑1
CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC                                                                                                                                                   <  2:2793471/140‑1
CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC                                                                                                                                                   <  2:356743/140‑1
CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC                                                                                                                                                   <  2:3753941/140‑1
  TTCGTGACAACCTGCTGCTTGGAGACGAGCCGCTTCCGAAGAAGGAGAGACGGGGGGAGGTCAAGGACGACATTGTTGAGTGGTTTCCTGCTTTCAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:3494984/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGACGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:4037600/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCcg                                                                                                                                                 >  2:5024684/1‑138
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  1:852039/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:4691121/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:4743126/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  1:3751752/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:1451242/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:4852097/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:2329394/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:907897/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:2795328/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:929886/1‑140
  TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATGTAAGCGGAGGCCAG                                                                                                                                                 >  2:3494883/1‑140
   TCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGGAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGC                                                                                                                                                >  2:12919/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGACGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  2:3029230/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  2:4115134/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  2:4183617/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  1:4884232/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  1:4261764/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  1:2623857/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  1:2236306/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  1:1538860/1‑140
    CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA                                                                                                                                               >  1:1538828/1‑140
        ACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAG                                                                                                                                           <  2:4874018/140‑1
        ACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAAGGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAG                                                                                                                                           <  1:1721153/140‑1
                                                     TGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCA                                                                                                                                            >  1:838161/1‑94
                                                     TGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCA                                                                                                                                            <  2:838161/94‑1
                                                                       ACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC                                                                                                                                                   <  1:1313648/69‑1
                                                                       ACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC                                                                                                                                                   >  2:1313648/1‑69
                                                                            TTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 >  2:1594224/1‑66
                                                                            TTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG                                                                                                                                                 <  1:1594224/66‑1
                                                                                                      GATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTAT                                                        >  2:2574083/1‑129
                                                                                                      GATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTAT                                                        >  2:5169021/1‑129
                                                                                                      GATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTAT                                                        <  1:5169021/129‑1
                                                                                                      GATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTAT                                                        <  1:2574083/129‑1
                                                                                                                              TTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCA                     <  2:3116113/140‑1
                                                                                                                                           CAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACAT        <  2:852039/140‑1
                                                                                                                                           CAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACAT        <  2:3751752/140‑1
                                                                                                                                              CAGCAGCTAGCAATTGCCAGAGCGCTGATGGGACATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCACGTATCGAACTCATCAGACACGTTATCGTCGAAATTTCCCGAAAATGAGACATTTC     >  1:1812884/1‑140
                                                                                                                                              CAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTC     >  2:4426688/1‑140
                                                                                                                                              CAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTC     >  1:1858658/1‑140
                                                                                                                                              CAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTC     >  1:3817842/1‑140
                                                                                                                                              CAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTC     >  1:3873970/1‑140
                                                                                                                                              CAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTC     >  1:707158/1‑140
                                                                                                                                              CAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATGTCCAGAAAAAGAGACATTTC     >  2:1090092/1‑140
                                                                                                                                               AGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCC    <  2:1420066/140‑1
                                                                                                                                               AGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCC    <  2:3011899/140‑1
                                                                                                                                                GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG   >  2:4641981/1‑140
                                                                                                                                                 CAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT  <  1:1649295/140‑1
                                                                                                                                                 CAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT  <  1:1058445/140‑1
                                                                                                                                                                                                                                                                                             
CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/3592873‑3592725
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT  <  NZ_CP034943/3592721‑3592586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.