| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 829222 | 356 (1.020) | 3 (0.010) | 3/244 | NT | 0.88% | coding (664/1689 nt) | treC | alpha,alpha‑phosphotrehalase |
| ? | NZ_CP034943 | 829226 = | 333 (0.980) | coding (668/1689 nt) | treC | alpha,alpha‑phosphotrehalase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/829082‑829222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGT > NZ_CP034943/829226‑829320 ATTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGAT > 1:3610472/1‑140ATTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGAT > 1:4573243/1‑140ATTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGAT > 2:3879341/1‑140 TTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATG < 2:1380958/140‑1 TGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTTAGGCTTGATGTCATCAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGCGGAGGAAGGCGACGGCCGCTCTTTTTACACTGCCGGGCCGCGGGTGCACGAATTT > 1:2753314/1‑140 CTTTAGGCTTGATGTCATCAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGCGGAGGAAGGCGACGGCCGCTCTTTTTACACTGACGGGCCGCGGGTGCACGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTAAC > 2:5743501/1‑140 TGATTTCTAAAGATCAGCTCTTTCCGAATGCGGAGGAAGGCGACGGCCGCTCTTTTTACACTGACGGGCCGCGGGTGCACGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTACGACAGCATGACGGTCGGT < 1:5743501/140‑1 ATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATG > 1:2382230/1‑43 ATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATG < 2:2382230/43‑1 ATTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/829082‑829222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGT > NZ_CP034943/829226‑829320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |