New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP034943 = 829222356 (1.020)3 (0.010) 3/244 NT 0.88% coding (664/1689 nt) treC alpha,alpha‑phosphotrehalase
?NZ_CP034943 829226 = 333 (0.980)coding (668/1689 nt) treC alpha,alpha‑phosphotrehalase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 375 total aligned reads displayed.

TTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTCAACAACTGTAGATCATTGCATTCGAT  >  NZ_CP034943/829083‑829357
                                                                                                                                           |                                                                                                                                       
ttGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATG                                                                                                                                         <  2:1380958‑M1/140‑1 (MQ=255)
 tGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCgatga                                                                                                                                        <  1:263494/140‑1 (MQ=255)
 tGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCgatga                                                                                                                                        <  2:4573243/140‑1 (MQ=255)
  gggAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCgatgat                                                                                                                                       <  1:3847203/140‑1 (MQ=255)
   ggAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGatgatg                                                                                                                                      >  1:3999906/1‑140 (MQ=255)
      aaaTGCAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTGGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGcc                                                                                                                                   <  2:5732918/140‑1 (MQ=255)
        aTGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGt                                                                                                                                 <  1:873325/140‑1 (MQ=255)
        aTGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGt                                                                                                                                 >  1:320968/1‑140 (MQ=255)
        aTGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGt                                                                                                                                 <  1:4389391/140‑1 (MQ=255)
        aTGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGt                                                                                                                                 <  1:1560087/140‑1 (MQ=255)
        aTGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGt                                                                                                                                 <  1:1497894/140‑1 (MQ=255)
        aTGAAGAGGTCAGAAAGCATGTCTATGAGATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAACGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGt                                                                                                                                 <  1:2621455/140‑1 (MQ=255)
        aTGAAGAGGTCAGAAAGCATGTATATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGt                                                                                                                                 <  2:4011525/140‑1 (MQ=255)
             gagGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGACTGTGGAAGACGGCGATGATGGCCGTAGCtt                                                                                                                            <  2:5024789/140‑1 (MQ=255)
             gagGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCtt                                                                                                                            <  1:986353/140‑1 (MQ=255)
                gTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTa                                                                                                                         <  2:1882715/140‑1 (MQ=255)
                gTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTa                                                                                                                         >  1:2873780/1‑140 (MQ=255)
                          aTGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACggg                                                                                                               >  2:3684629/1‑140 (MQ=255)
                          aTGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACggg                                                                                                               >  2:5532745/1‑140 (MQ=255)
                           tGTCTTTGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGc                                                                                                              >  1:3124089/1‑140 (MQ=255)
                           tGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGc                                                                                                              >  1:1802954/1‑140 (MQ=255)
                                   atatcatGCAATTATGCTTTGAAAAGGGAATATACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCAGAATGTGGAAGACGGCGATGATGGACGTAGCTTTTACACTGACGTCCCGCGGGTg                                                                                                      >  2:5418612/1‑140 (MQ=255)
                                     atgatgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCa                                                                                                    >  2:5623970/1‑140 (MQ=255)
                                       gatgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTTGAAGACGGCGATGATGGCCGTAGATTTTACACTGACGGGCCGCGGGTGCATg                                                                                                  >  2:3353061/1‑140 (MQ=255)
                                         tgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTTAGGCTTGATGTCATCAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGCGGAGGAAGGCGACGgccgctctttttacactgccgggccgcgggtgcacgaattt                                                                                                >  1:2753314‑M1/1‑99 (MQ=255)
                                         tgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTGGCTTTTACACTGACGGGCCGCGGGTGCATGaa                                                                                                >  2:3083900/1‑140 (MQ=255)
                                         tgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGCCGGGCCGCGGGTGCATGaa                                                                                                >  2:2341790/1‑140 (MQ=255)
                                         tgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGaa                                                                                                >  2:2847024/1‑140 (MQ=255)
                                         tgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGaa                                                                                                >  1:1715113/1‑140 (MQ=255)
                                         tgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGaa                                                                                                >  2:4449851/1‑140 (MQ=255)
                                         tgCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGACGTAGATTTTACACTGACGGGCCGCGGGtgaatgaa                                                                                                >  2:4355760/1‑140 (MQ=255)
                                           cATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGAGCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCAGGAAtt                                                                                              >  1:3906044/1‑140 (MQ=255)
                                           cATTTATGGATTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGCTTTCTAAAGATCAGCGCTTTCCGCATGTGGAACACGCCGATGATGGCCGTAGCTATAACACTCCCGGGCCGCGGGTGCATGAAtt                                                                                              >  2:3254942/1‑140 (MQ=255)
                                              ttttGGTTTGAAAAGGGAATAGACGGCTTCAGGGTTGATGTCATTAACCTGATTTCAAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGACGTAGCTTTTACACTGACGGCCCCCGGTTGCATGAAtttat                                                                                           >  1:5201712/1‑138 (MQ=255)
                                              ttttGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCTTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCt                                                                                           >  2:2379835/1‑140 (MQ=255)
                                              ttttGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTAAACTGACGGGCCGCGGGTGCATGAATTTCt                                                                                           >  2:3593561/1‑140 (MQ=255)
                                                  ggTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCat                                                                                       <  1:4595242/140‑1 (MQ=255)
                                                      tGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGGTTTTACACTGACGGGCCGCGGGTGCATGAATTACTGCattaaa                                                                                   >  2:4843470/1‑140 (MQ=255)
                                                                       gCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGaa                                                                           >  1:3733018/1‑131 (MQ=255)
                                                                       gCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGttt                                                                  >  2:2036205/1‑140 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAACGGTGtttt                                                                 <  2:879798/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  1:1053804/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  2:243830/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  2:270595/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 >  2:1659048/1‑140 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  1:2983145/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 >  1:1021973/1‑140 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 >  1:1353816/1‑140 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  1:2304169/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  1:2901750/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  1:4538396/140‑1 (MQ=255)
                                                                        cTTCAGGCTTGATGTCATTAACCTGATGTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  1:5625659/140‑1 (MQ=255)
                                                                        cTTCAGGCTGGATGTCATTAACCTGATTTCTAAAGATCAGCGCTGTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  2:4556024/140‑1 (MQ=255)
                                                                          tCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTca                                                               <  1:5303274/140‑1 (MQ=255)
                                                                          tCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTca                                                               <  1:625055/140‑1 (MQ=255)
                                                                          tCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTca                                                               <  1:1940763/140‑1 (MQ=255)
                                                                          tCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTca                                                               <  1:1231801/140‑1 (MQ=255)
                                                                          tCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTca                                                               <  2:1139253/140‑1 (MQ=255)
                                                                            aGGTTTGTTGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTcaca                                                             <  2:5289417/140‑1 (MQ=255)
                                                                                ttGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATtat                                                         <  2:3795044/140‑1 (MQ=255)
                                                                                 tGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATtata                                                        >  1:4174694/1‑140 (MQ=255)
                                                                                  gATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGTCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGAATGAAATGCACGAAAAGGTGTTTTCACATTATaa                                                       >  1:5455681/1‑140 (MQ=255)
                                                                                  gATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATaa                                                       <  2:584166/140‑1 (MQ=255)
                                                                                  gATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATaa                                                       <  1:1659048/140‑1 (MQ=255)
                                                                                   aTGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 <  1:4728105/129‑1 (MQ=255)
                                                                                   aTGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGtttt                                                                 >  2:4728105/1‑129 (MQ=255)
                                                                                   aTGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAAc                                                      >  1:3332002/1‑140 (MQ=255)
                                                                                   aTGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACAGTATAAc                                                      >  1:5133021/1‑140 (MQ=255)
                                                                                   aTGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAACACGCCGATGATCGCCGGAGCTTTTACACAGACGGGCACCGGCTGCATGAATTTCTGCATGAAAGCACCGAAAAGGTGTATTAACAGtatacc                                                      >  2:4962866/1‑138 (MQ=255)
                                                                                        aTTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGGATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTAt                                                 >  1:1525800/1‑140 (MQ=255)
                                                                                        aTTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTAt                                                 >  2:3916783/1‑140 (MQ=255)
                                                                                        aTTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTAt                                                 >  2:5471791/1‑140 (MQ=255)
                                                                                          tAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGCAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGa                                               <  1:366585/140‑1 (MQ=255)
                                                                                          tAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGa                                               <  1:5534513/140‑1 (MQ=255)
                                                                                          tAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGa                                               >  1:4337680/1‑140 (MQ=255)
                                                                                               tGATTTCTAAAGATCAGCTCTTTCCGAATGCGGAGGAAGGCGACGgccgctctttttacactgacgggccgcgggtgcacgaatttctgcatgaaatgaacgaaaaggtgttttcacattacgacagcatgacggtcggt                                          <  1:5743501‑M1/140‑96 (MQ=255)
                                                                                                 aTTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGAcggtcgg                                        >  1:4965764/1‑140 (MQ=255)
                                                                                                 aTTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGAcggtcg                                         >  2:146943/1‑139 (MQ=255)
                                                                                                 aTTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGAcggtcg                                         <  1:146943/139‑1 (MQ=255)
                                                                                                 aTTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATG                                                                                                                                         >  1:2382230‑M1/1‑43 (MQ=255)
                                                                                                  tttCTACAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGAcggtcggt                                       <  1:251560/140‑1 (MQ=255)
                                                                                                       aaaGATCAGCGCTGTCCGAAGGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATGTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGAt                                  <  2:66860/140‑1 (MQ=255)
                                                                                                           aTCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATaa                                                       <  2:1513596/115‑1 (MQ=255)
                                                                                                           aTCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCt                              >  1:2081719/1‑140 (MQ=255)
                                                                                                                cgcTTTGCGAATGTTGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGTGTTTGCATGTATTTCTGCATGAAATGAACTAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  1:4887325/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAATTTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  2:1048097/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  2:255854/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  2:2630038/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  2:4066495/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  1:3563113/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  1:5514588/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAATGGGGAAGACGGCGATGATGGCCGTAGCTTGTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  1:420819/140‑1 (MQ=255)
                                                                                                                cgcTTTCCGAAGGTGGAAGACGGCGATGATGGCGGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTTCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaac                         <  2:4130404/140‑1 (MQ=255)
                                                                                                                          aTGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTCAACAACTGTAGAt               <  2:5119523/140‑1 (MQ=255)
                                                                                                                          aTGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTCAACAACTGTAGAt               <  2:3439341/140‑1 (MQ=255)
                                                                                                                                    cGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTCAACAACTGTAGATCATTGCATTc     >  2:1470875/1‑140 (MQ=255)
                                                                                                                                     ggCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTCAACAACTGTAGATCATTGCATTCg    <  2:3857019/140‑1 (MQ=255)
                                                                                                                                       cGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTcaa                          <  2:1783507/116‑1 (MQ=255)
                                                                                                                                       cGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTCAACAACTGTAGATCATTGCATTCGat  >  1:2036465/1‑140 (MQ=255)
                                                                                                                                        gatgatGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATaa                                                       <  1:761702/86‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                       
TTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGATATGATGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTCAGGCTTGATGTCATTAACCTGATTTCTAAAGATCAGCGCTTTCCGAATGTGGAAGACGGCGATGATGGCCGTAGCTTTTACACTGACGGGCCGCGGGTGCATGAATTTCTGCATGAAATGAACGAAAAGGTGTTTTCACATTATAACAGTATGACGGTCGGTGAGATGTCTTCAACAACTGTAGATCATTGCATTCGAT  >  NZ_CP034943/829083‑829357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.