| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 2653801 | 463 (1.320) | 3 (0.010) | 3/246 | NT | 0.67% | coding (466/1161 nt) | safA | spore coat assembly protein SafA |
| ? | NZ_CP034943 | 2653808 = | 440 (1.290) | coding (459/1161 nt) | safA | spore coat assembly protein SafA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTGAACAGCCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2653660‑2653801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC > NZ_CP034943/2653808‑2653946 GCTGAACAGCCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAAT > 1:2420755/1‑140GCTGAACAGCCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAAT < 2:1646816/140‑1GCTGAACAGCCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAAT < 2:9286/140‑1 TTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGGTCTTGCATATGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCT > 1:2131088/1‑127 TTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGGTCTTGCATATGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCT < 2:2131088/127‑1 ATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGGTCTTGCATATGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGAGGCGACCAAGGCTGGAAAAGCTGTT > 2:1188648/1‑140 GGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC < 2:4618165/140‑1 GGTCTTGCATGTGAAACATATGATCCATATTTCCGTCATGATGTTCTTTCGGCTCCTCCGGGTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC < 2:3453266/140‑1 GCTGAACAGCCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2653660‑2653801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC > NZ_CP034943/2653808‑2653946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |