BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 2653801	463 (1.320)	3 (0.010)	3/246	NT	0.67%	coding (466/1161 nt)	safA	spore coat assembly protein SafA
*	?	NZ_CP034943	2653808 =	440 (1.290)	3 (0.010)	3/246	NT	0.67%	coding (459/1161 nt)	safA	spore coat assembly protein SafA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 473 total aligned reads displayed.

CCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC  >  NZ_CP034943/2653669‑2653946

ccGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTgg                                                                                                                                            >  1:5521630/1‑140 (MQ=255)

ccGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTgg                                                                                                                                            >  1:2604254/1‑140 (MQ=255)

 cGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGt                                                                                                                                           <  2:1024583/140‑1 (MQ=255)

 cGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGt                                                                                                                                           <  2:1118170/140‑1 (MQ=255)

       aggcGGAACTGTGTGATGAACGTTTTCTTCGTCCATACCGCCTACCTCTGGCGCCTTGGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCa                                                                                                                                     <  2:1518787/137‑1 (MQ=255)

        ttCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAt                                                                                                                                    <  1:1880038/140‑1 (MQ=255)

        ttCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAt                                                                                                                                    <  1:674585/140‑1 (MQ=255)

        ttCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAt                                                                                                                                    <  2:3791442/140‑1 (MQ=255)

        ttCGGAACTGTGTGATGAACGTTTTCGTCTGCCATACCGCCTACCTCTGGCGCCTTGGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAt                                                                                                                                    <  2:3237765/140‑1 (MQ=255)

         tCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtg                                                                                                                                   <  1:2994488/140‑1 (MQ=255)

          cGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtgt                                                                                                                                  >  1:2040407/1‑140 (MQ=255)

           ggAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAtgtg                                                                                                                                 <  2:534295/140‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATCTTCGGATAATTTGCATTTTCCATATTACTCATCGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  2:647844/140‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  1:1045845/140‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  1:4837067/140‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  1:3701027/140‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  2:2975963/140‑1 (MQ=255)

            gAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  2:4423266/140‑1 (MQ=255)

                 gtgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACat                                                                                                                           <  2:3621471/140‑1 (MQ=255)

                  tgtgATGAAGGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAt                                                                                                                                    <  2:2848576/130‑1 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAACTTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:744281/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGc                                                                                                                                      >  1:2412116/1‑128 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCAt                                                                                                                                    >  1:1490550/1‑130 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                <  2:5193704/134‑1 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGa                                                                                                                                >  1:5193704/1‑134 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  2:4620218/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:5789684/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  2:5536411/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:1103703/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:4672652/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:3229611/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:2493090/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:4038536/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:2698506/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          >  1:358954/1‑140 (MQ=255)

                  tgtgATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACata                                                                                                                          <  1:3868002/140‑1 (MQ=255)

                                       ccATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATACTTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCatga                                                                                                     <  2:4767410/140‑1 (MQ=255)

                                          tACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGt                                                                                                  >  1:4165110/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCa                                                                                                                                     >  1:3048719/1‑100 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGtttttt                                                                                             >  2:3946107/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGtttttt                                                                                             >  2:1359111/1‑140 (MQ=255)

                                               ccTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCAATATTTCCGTCATGATGtttttt                                                                                             >  2:5737536/1‑140 (MQ=255)

                                                  aCCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCgg                                                                                          <  2:2572049/140‑1 (MQ=255)

                                                  aCCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCgg                                                                                          <  2:4684319/140‑1 (MQ=255)

                                                  aCCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCgg                                                                                          <  1:349804/140‑1 (MQ=255)

                                                  aCCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCgg                                                                                          >  2:4543603/1‑140 (MQ=255)

                                                   ccTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGc                                                                                         <  2:3418218/140‑1 (MQ=255)

                                                   ccTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGc                                                                                         <  2:5498068/140‑1 (MQ=255)

                                                    ctctGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGACATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGct                                                                                        >  1:376157/1‑140 (MQ=255)

                                                       tGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATCCATATGATCCATATTTCCGTCATGATGTTTTTTCGGctcct                                                                                     >  1:5094464/1‑140 (MQ=255)

                                                       tGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGctcct                                                                                     <  1:1220983/140‑1 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   >  2:4308638/1‑140 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   >  2:1681999/1‑140 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   >  1:1392504/1‑140 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   >  1:5738670/1‑140 (MQ=255)

                                                         gcgcCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCAGCTTACTCATAGCCTCCTGTTGTGGAAATTTATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCtcctcc                                                                                   <  1:3392148/140‑1 (MQ=255)

                                                                   cATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         <  2:3739201/140‑1 (MQ=255)

                                                                   cATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         <  2:793010/140‑1 (MQ=255)

                                                                   cATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         <  2:510440/140‑1 (MQ=255)

                                                                    atatTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCATCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAggggg                                                                        <  2:5796375/140‑1 (MQ=255)

                                                                        tAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATCGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGAc                                                                    <  2:2708336/140‑1 (MQ=255)

                                                                         aGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGAcc                                                                   <  1:1997887/140‑1 (MQ=255)

                                                                               atTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCt                                                             >  2:5584282/1‑140 (MQ=255)

                                                                               atTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCt                                                             >  1:4441904/1‑140 (MQ=255)

                                                                                ttCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGTCTg                                                            >  2:3099935/1‑140 (MQ=255)

                                                                                 tCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTgg                                                           >  2:1915185/1‑140 (MQ=255)

                                                                                      tAATTTGCATTTTCCATATTACTCCTAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCCGTTTAGGGGGCGACCAAGGCTGGAAAAg                                                      <  1:499116/140‑1 (MQ=255)

                                                                                           tGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         >  2:4093665/1‑116 (MQ=255)

                                                                                           tGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAgggg                                                                         <  1:4093665/116‑1 (MQ=255)

                                                                                           tGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGATGtt                                                 <  1:2258948/140‑1 (MQ=255)

                                                                                            gCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGttt                                                <  2:4874879/140‑1 (MQ=255)

                                                                                               ttttCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcat                                             <  2:2348282/140‑1 (MQ=255)

                                                                                               ttttCCATATTACTCAGAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcat                                             <  2:1467156/140‑1 (MQ=255)

                                                                                               ttttCCATAGTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcat                                             <  2:1205090/140‑1 (MQ=255)

                                                                                                 ttCCATATTACTCATAGCCTCCTGTTGTGGAAATTGTTCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatat                                           <  1:2118611/140‑1 (MQ=255)

                                                                                                 ttCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatat                                           <  1:5584282/140‑1 (MQ=255)

                                                                                                 ttCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatat                                           <  1:1676386/140‑1 (MQ=255)

                                                                                                 ttCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatat                                           <  1:3643870/140‑1 (MQ=255)

                                                                                                 ttCCATATTACTCAGAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatat                                           <  2:2193456/140‑1 (MQ=255)

                                                                                                 ttCCATAGTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTtcatat                                           <  1:2862497/140‑1 (MQ=255)

                                                                                                         tACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATGTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCAtaataa                                   <  2:891122/140‑1 (MQ=255)

                                                                                                            tCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCg                                >  2:4491662/1‑140 (MQ=255)

                                                                                                            tCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCg                                >  1:3951285/1‑140 (MQ=255)

                                                                                                              aTAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGtt                              >  2:1173435/1‑140 (MQ=255)

                                                                                                                 gCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTcac                           <  2:5024170/140‑1 (MQ=255)

                                                                                                                  cctcctGGTGGGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTcaca                          <  2:2264689/140‑1 (MQ=255)

                                                                                                                   ctcctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACAt                         <  1:4543603/140‑1 (MQ=255)

                                                                                                                   ctcctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACAt                         <  1:821046/140‑1 (MQ=255)

                                                                                                                   ctcctGTTGTGGAAATTGATCGTGGTCGTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACAt                         <  1:4346903/140‑1 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCa                       >  1:3180318/1‑140 (MQ=255)

                                                                                                                     cctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGATTCATATCATAATAATCGTTCACATCa                       >  1:5284718/1‑140 (MQ=255)

                                                                                                                      ctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGTGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAg                      >  2:140864/1‑140 (MQ=255)

                                                                                                                      ctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATAAg                      >  2:2295653/1‑140 (MQ=255)

                                                                                                                      ctGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGGTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAg                      >  2:2085245/1‑140 (MQ=255)

                                                                                                                         ttgtGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCtt                   <  2:3492755/140‑1 (MQ=255)

                                                                                                                         ttgtGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCtt                   <  1:2356965/140‑1 (MQ=255)

                                                                                                                           gtgGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATAGTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCa                 <  2:2420755/140‑1 (MQ=255)

                                                                                                                           gtgGAAATTGATCTTGGTCTTGCATGTGAGACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCa                 <  1:4513598/140‑1 (MQ=255)

                                                                                                                             gcaaaCTGATCTAGGTCGTGCATGTGATACATATGATCCAAAGTTCCCTCATGATGTTTATTCGGCTCCTCCGGTTTAGGGCCCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTctgt               <  1:873549/138‑4 (MQ=255)

                                                                                                                                      tCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCAGGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTGTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATc      >  2:365562/1‑140 (MQ=255)

CCGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTGTTGTGGAAATTGATCTTGGTCTTGCATGTGATACATATGATCCATATTTCCGTCATGATGTTTTTTCGGCTCCTCCGGTTTAGGGGGCGACCAAGGCTGGAAAAGCTGTTTCATATCATAATAATCGTTCACATCAGCTTCAGGATACACATCTTCC  >  NZ_CP034943/2653669‑2653946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.