BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP009974	5,273,059	Δ2,603 bp		RPPX_23450–[RPPX_23460]	RPPX_23450, RPPX_23455, [RPPX_23460]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009974	5273059–5275656	5275661	6–2603	369 [0]	[0] 369	RPPX_23450–[RPPX_23460]	RPPX_23450,RPPX_23455,[RPPX_23460]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	= 5273058	0 (0.000)	354 (1.020)	189/286	0.2	100%	intergenic (‑275/+106)	RPPX_23445/RPPX_23450	transporter/ATPase AAA
*	?	CP009974	5275662 =	0 (0.000)	354 (1.020)	189/286	0.2	100%	coding (38/1266 nt)	RPPX_23460	GntR family transcriptional regulator

Only 100 of 369 total aligned reads displayed.

TCCTGCGTGGCTGCCTGCCAGAAAAGTGTCCGGATGACCGTGGAGTCGGTGTCCGGATGCTCGTGGAATGAGTGTCCGGATCAGCGTGGAATCACTGTCCGGATGCGCGTGGAATGGGTGTCCGAGTCAGCGTGGAATCCGCAGCCTATGAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAGTCTCTTGACAC  >  CP009974/5275512‑5275812

aacgggacggaacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatga                                                                                                                                                        >  2:3424447‑M2/151‑151 (MQ=255)

 acgggacggaacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgaa                                                                                                                                                       <  1:5661028‑M2/2‑1 (MQ=255)

  cgggacggaacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgaaa                                                                                                                                                      <  2:1871319‑M2/3‑1 (MQ=255)

    ggacggaacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAgg                                                                                                                                                    <  2:279431‑M2/5‑1 (MQ=255)

      acggaacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGtt                                                                                                                                                  <  1:6388236‑M2/7‑1 (MQ=255)

        ggaacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGa                                                                                                                                                >  2:7140397‑M2/143‑151 (MQ=255)

          aacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgACAGGTTGATg                                                                                                                                              >  2:3827857‑M2/141‑151 (MQ=255)

          aacgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATg                                                                                                                                              >  1:5333183‑M2/141‑151 (MQ=255)

           acgcgtattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATgg                                                                                                                                             >  1:101063‑M2/140‑151 (MQ=255)

                tattcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAg                                                                                                                                        <  1:4775140‑M2/17‑1 (MQ=255)

                 attcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaacaattccctcggtgcgcgcgagggctcagaccatgcaggtgtcggtttctacggtgcttgaggccgatgAAAGGCTGATGGCTGAgg                                                                                                                                       >  2:760322‑M2/134‑151 (MQ=255)

                  ttcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATg                                                                                                                                              >  1:46778‑M2/133‑143 (MQ=255)

                  ttcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAggg                                                                                                                                      <  2:7005627‑M2/19‑1 (MQ=255)

                   tcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGagggg                                                                                                                                     >  1:7153231‑M2/132‑150 (MQ=255)

                   tcgaactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGgt                                                                                                                                     >  2:2053030‑M2/132‑151 (MQ=255)

                      aactgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTa                                                                                                                                  <  2:1675615‑M2/23‑1 (MQ=255)

                        ctgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACt                                                                                                                                <  2:1555775‑M2/25‑1 (MQ=255)

                        ctgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACt                                                                                                                                <  1:5791231‑M2/25‑1 (MQ=255)

                        ctgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACt                                                                                                                                <  1:5409120‑M2/25‑1 (MQ=255)

                         tgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgcggcctatgAAAGGTTGATGGCTGAGGGTGTACTc                                                                                                                               >  2:3105919‑M2/126‑151 (MQ=255)

                         tgtcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgCAAGGTTGATGGCTGAGGGTGTAATc                                                                                                                               >  2:6671732‑M2/126‑151 (MQ=255)

                           tcatgggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCaa                                                                                                                             >  1:5092722‑M2/124‑151 (MQ=255)

                               gggtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAActct                                                                                                                         <  1:1586819‑M2/32‑1 (MQ=255)

                                 gtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCg                                                                                                                       <  2:6636024‑M2/34‑1 (MQ=255)

                                 gtgaaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCg                                                                                                                       <  1:2330723‑M2/34‑1 (MQ=255)

                                    aaatccagtcgcggatagcctctcgaacctacaccccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctccggtgcttgaggcctatgAAAGGTTGATGGCGGAGGGTGTACTCACCTCTCGTcc                                                                                                                    >  2:6858842‑M2/115‑151 (MQ=255)

                                    aaatccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTcc                                                                                                                    <  2:4155572‑M2/37‑1 (MQ=255)

                                      atccagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTg                                                                                                                  <  2:5348362‑M2/39‑1 (MQ=255)

                                         cagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCt                                                                                                               >  2:5012301‑M2/110‑151 (MQ=255)

                                         cagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCt                                                                                                               >  1:333156‑M2/110‑151 (MQ=255)

                                         cagtcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCt                                                                                                               >  2:521764‑M2/110‑151 (MQ=255)

                                            tcgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCg                                                                                                            >  2:402846‑M2/107‑151 (MQ=255)

                                             cgcggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCgg                                                                                                           <  1:6485613‑M2/46‑1 (MQ=255)

                                                ggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCtt                                                                                                        >  2:3626294‑M2/103‑151 (MQ=255)

                                                ggatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgagccctatgAACGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGctccgccgt                                                                                                        >  1:5424803‑M2/103‑147 (MQ=255)

                                                 gatagcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCttt                                                                                                       >  1:2054437‑M2/102‑151 (MQ=255)

                                                 gatagcctctcgaacctacacaccagccgcaagaattccctcggtgcgtgcgatggccccgaccatgcaggtgtcggtttctacggtgcttcaggcctatgCAAGGTTGATGGATGAGGCTATACTCAACTCTCGTCCAGgctccgccctt                                                                                                       >  2:2925698‑M2/102‑146 (MQ=255)

                                                    agcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTAc                                                                                                    <  2:2956817‑M2/53‑1 (MQ=255)

                                                    agcctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggcttctacggggctggagggctatgAAAGGTTGATGGCGGAGGGTGTACTCACCTCTCGTCCGGTCTCCGtctttttc                                                                                                    >  2:4427433‑M2/99‑149 (MQ=255)

                                                      cctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGt                                                                                                  >  2:1427614‑M2/97‑151 (MQ=255)

                                                      cctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGt                                                                                                  >  2:3542571‑M2/97‑151 (MQ=255)

                                                       ctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTa                                                                                                 >  2:5323469‑M2/96‑151 (MQ=255)

                                                       ctctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggggtcggtttctacggtgcttgaggcctatgAAAGGTGGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTa                                                                                                 <  2:4666073‑M2/56‑1 (MQ=255)

                                                        tctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATg                                                                                                                                              <  2:2132756‑M2/11‑1 (MQ=255)

                                                        tctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATg                                                                                                                                              >  1:2132620‑M2/95‑105 (MQ=255)

                                                        tctcgaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAg                                                                                                >  2:240682‑M2/95‑151 (MQ=255)

                                                            gaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCgg                                                                                            >  1:6558249‑M2/91‑151 (MQ=255)

                                                            gaacctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCgg                                                                                            >  1:4949744‑M2/91‑151 (MQ=255)

                                                               cctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGcc                                                                                         >  1:6146663‑M2/88‑151 (MQ=255)

                                                                ctacacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCa                                                                                        <  1:5627820‑M2/65‑1 (MQ=255)

                                                                  acacaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGt                                                                                      >  2:6019678‑M2/85‑151 (MQ=255)

                                                                    acaccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTgg                                                                                    >  1:4411041‑M2/83‑151 (MQ=255)

                                                                       ccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGgcgc                                                                                 >  1:3512120‑M2/80‑151 (MQ=255)

                                                                       ccaggcgcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGgcgc                                                                                 <  1:491038‑M2/72‑1 (MQ=255)

                                                                             gcaagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTgg                                                                           >  1:1680924‑M2/74‑151 (MQ=255)

                                                                              caagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGt                                                                          >  1:7239512‑M2/73‑151 (MQ=255)

                                                                               aagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTa                                                                         <  2:2582553‑M2/80‑1 (MQ=255)

                                                                               aagaattccctcggtgcgtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTa                                                                         >  2:6357375‑M2/72‑151 (MQ=255)

                                                                                                gtgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGTCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCCCCGCACTCGGccc                                                        >  1:3185975‑M2/55‑151 (MQ=255)

                                                                                                 tgcgatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCa                                                       <  1:1251616‑M2/98‑1 (MQ=255)

                                                                                                    gatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTTCTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCccaacg                                                    >  1:102507‑M2/51‑149 (MQ=255)

                                                                                                    gatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAgg                                                    >  1:2892793‑M2/51‑151 (MQ=255)

                                                                                                    gatggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAgg                                                    <  2:2256648‑M2/101‑1 (MQ=255)

                                                                                                       ggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCgg                                                                                            <  2:5817051‑M2/61‑1 (MQ=255)

                                                                                                       ggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCtt                                                 <  2:5695992‑M2/104‑1 (MQ=255)

                                                                                                       ggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCtt                                                 <  1:854724‑M2/104‑1 (MQ=255)

                                                                                                       ggctcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGAGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCtt                                                 <  1:2006824‑M2/104‑1 (MQ=255)

                                                                                                          tcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGAt                                              >  2:17796‑M2/45‑151 (MQ=255)

                                                                                                          tcagaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGAt                                              <  1:6675488‑M2/107‑1 (MQ=255)

                                                                                                            agaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCg                                            >  1:7040263‑M2/43‑151 (MQ=255)

                                                                                                            agaccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCg                                            <  1:4623068‑M2/109‑1 (MQ=255)

                                                                                                              accatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTg                                          >  2:6157792‑M2/41‑151 (MQ=255)

                                                                                                               ccatgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCCAGGCTTGATCGTGa                                         >  2:4295771‑M2/40‑151 (MQ=255)

                                                                                                               ccatgcaggtggcggttgctgcggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCACCTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGa                                         <  2:4762396‑M2/112‑1 (MQ=255)

                                                                                                                catgcaggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGaa                                        >  2:1165924‑M2/39‑151 (MQ=255)

                                                                                                                    catgtgtcggtttctacggtgcttgaggcctatgCAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTgg                                    <  2:6240995‑M2/117‑1 (MQ=255)

                                                                                                                     aggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGa                                   <  1:1105406‑M2/118‑1 (MQ=255)

                                                                                                                     aggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGa                                   <  1:3690680‑M2/118‑1 (MQ=255)

                                                                                                                     aggtgtcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGa                                   >  1:1959306‑M2/34‑151 (MQ=255)

                                                                                                                          tcggtttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGt                              <  1:1165924‑M2/123‑1 (MQ=255)

                                                                                                                              tttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTtgtg                          >  2:1460913‑M2/25‑151 (MQ=255)

                                                                                                                               ttctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTgg                         >  1:1858361‑M2/24‑151 (MQ=255)

                                                                                                                                tctacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGa                        <  2:4532973‑M2/129‑1 (MQ=255)

                                                                                                                                  tacggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGAtc                      <  2:3236196‑M2/131‑1 (MQ=255)

                                                                                                                                   acggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGAtct                     >  1:2506427‑M2/20‑151 (MQ=255)

                                                                                                                                    cggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGAtctc                    <  1:2947025‑M2/133‑1 (MQ=255)

                                                                                                                                     ggtgcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTcg                   <  1:3616244‑M2/134‑1 (MQ=255)

                                                                                                                                        gcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCgcgc                <  1:3883168‑M2/137‑1 (MQ=255)

                                                                                                                                        gcttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCgcgc                >  1:6917317‑M2/15‑151 (MQ=255)

                                                                                                                                        gcgtgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCgcgc                <  2:5649698‑M2/137‑1 (MQ=255)

                                                                                                                                         cttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTGCGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGcc               <  2:5520417‑M2/138‑1 (MQ=255)

                                                                                                                                         cttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGCACCCGCTGTGGATCTCGCGcc               >  2:5062561‑M2/14‑151 (MQ=255)

                                                                                                                                          ttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCa              <  1:6019678‑M2/139‑1 (MQ=255)

                                                                                                                                          ttgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCa              <  2:3683724‑M2/139‑1 (MQ=255)

                                                                                                                                           tgaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAg             <  1:5848406‑M2/140‑1 (MQ=255)

                                                                                                                                            gaggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAGt            <  1:4128700‑M2/141‑1 (MQ=255)

                                                                                                                                              ggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAGtct          >  1:9968‑M2/9‑151 (MQ=255)

                                                                                                                                              ggcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAGtct          >  2:2612835‑M2/9‑151 (MQ=255)

                                                                                                                                               gcctatgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAGtctc         >  2:7244872‑M2/8‑151 (MQ=255)

                                                                                                                                                   atgAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAGTCCCTTGa     >  1:264490‑M2/4‑151 (MQ=255)

TCCTGCGTGGCTGCCTGCCAGAAAAGTGTCCGGATGACCGTGGAGTCGGTGTCCGGATGCTCGTGGAATGAGTGTCCGGATCAGCGTGGAATCACTGTCCGGATGCGCGTGGAATGGGTGTCCGAGTCAGCGTGGAATCCGCAGCCTATGAAAGGTTGATGGCTGAGGGTGTACTCAACTCTCGTCCTGGCTCCGGCTTTTACGTAGCCGGGCCAGTGGCGCCCTTGGTACTCACCGAACTCGGCCCAAGGCTTGATCGTGAAGTGGACCCGTTGTGGATCTCGCGCCAGTCTCTTGACAC  >  CP009974/5275512‑5275812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`