| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | U00096 | 1,617,936 | Δ310 bp | [ydeA]–[marC] | [ydeA], [marC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | U00096 | 1617936 | 1618245 | 310 | 36 [0] | [0] 35 | [ydeA]–[marC] | [ydeA],[marC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | = 1617935 | 0 (0.000) | 34 (0.530) | 32/290 | 1.7 | 100% | coding (908/1191 nt) | ydeA | L‑arabinose exporter |
| ? | U00096 | 1618246 = | 0 (0.000) | coding (663/666 nt) | marC | inner membrane protein MarC | |||||
TCGGTGGTGCGGGCATTATTGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTGCTGAGTATTTTCTGGGGGATCGCGATGATGATCATCGGGCTTGGTATGCAGGTTAAAGTGCTGGCGCTGGCACCAGATGCTACCGACGTCGCGATGGCGCTATTCTCCGGCATATTTAATATTGGAATCGGGGCGGGT > U00096/1617788‑1618074 | tCGGTGGTGCGGGCATTATTGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGt < 2:343670/148‑1 (MQ=255)tCGGTGGTGCGGGCATTATTGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGt < 2:343669/148‑1 (MQ=255) gtggtgCGGGCATTATTGGCAGCGTGATTTTCGGTAAACTGGTTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTat < 1:343671‑M1/147‑3 (MQ=255) ggCATTATTGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttt > 1:343686‑M1/1‑137 (MQ=255) cATTATTGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgtttt < 1:343672‑M1/147‑13 (MQ=255) ttattGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttt < 1:343673‑M1/144‑12 (MQ=255) tattGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatg > 2:343683‑M1/1‑132 (MQ=255) ttGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgat > 2:343696‑M1/1‑130 (MQ=255) ggCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGGACAGTGAAATACACCTCGGGGTatggtacgttttaatgattt < 1:343674‑M1/148‑21 (MQ=255) cAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttc > 1:343685‑M1/1‑126 (MQ=255) tCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgtt < 2:343675‑M1/148‑34 (MQ=255) cGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgtta > 1:343689‑M1/1‑114 (MQ=255) gTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACATCGGGGTatggtacgttttaatgatttccaggatgccgttaat > 1:343698‑M1/1‑112 (MQ=255) aaCTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataat < 1:343676‑M1/148‑40 (MQ=255) cTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataa < 1:343677‑M1/148‑42 (MQ=255) tGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacatacc < 1:343679‑M1/148‑62 (MQ=255) tGCGGTGGTTAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggaggccgttaataataaactgcacacccatacatacc < 2:343678‑M1/148‑62 (MQ=255) gttatgggtgagtaCGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacatacc < 1:585409‑M1/142‑62 (MQ=255) gCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacatacca < 2:343680‑M1/148‑63 (MQ=255) gTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagc < 1:343681‑M1/148‑65 (MQ=255) tGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcag > 2:343692‑M1/1‑82 (MQ=255) cGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccat < 2:343686‑M1/148‑76 (MQ=255) tGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgg < 2:343688‑M1/148‑83 (MQ=255) gcTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttcaaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggag < 1:343683‑M1/148‑86 (MQ=255) cTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggaga < 2:343691‑M1/148‑87 (MQ=255) cTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacggg > 1:343709‑M1/1‑62 (MQ=255) tGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacccccatacataccagcaggaatcccatcagacgggagatcgcttc > 1:343710‑M1/1‑55 (MQ=255) tGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttc < 1:343682‑M1/148‑94 (MQ=255) ggTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttca < 2:343685‑M1/148‑95 (MQ=255) gCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttcaatgcc < 2:343687‑M1/148‑100 (MQ=255) tGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttcaatgccacc > 1:343695‑M1/1‑46 (MQ=255) tGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttcaatgccacccttgcccac > 1:343697‑M1/1‑37 (MQ=255) aGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttcaatgccacccttgcccaccagccgcataattgcgc < 1:343690‑M1/148‑129 (MQ=255) aGTGAAATACACCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttcaatgccacccttgcccaccagccgcataattgcgc > 1:343702‑M1/1‑20 (MQ=255) acCTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacatacaagcaggaatcccatcagacgggagatcgcttcaatgacacccttgcccaccagccgcataattgcgccggagctgcg < 2:343684‑M1/148‑139 (MQ=255) ccTCGGGGTatggtacgttttaatgatttccaggatgccgttaataataaactgcacacccatacataccagcaggaatcccatcagacgggagatcgcttcaatgccacccttgcccaccagccgcataattgcgccggagctgcgt < 2:343689‑M1/148‑140 (MQ=255) | TCGGTGGTGCGGGCATTATTGGCAGCGTGATTTTCGGTAAACTGGGTAATCAGTATGCGTCTGCGTTGGTGAGTACGGCGATTGCGCTGTTGCTGGTGTGCCTGGCATTGCTGTTACCTGCGGCGAACAGTGAAATACACCTCGGGGTGCTGAGTATTTTCTGGGGGATCGCGATGATGATCATCGGGCTTGGTATGCAGGTTAAAGTGCTGGCGCTGGCACCAGATGCTACCGACGTCGCGATGGCGCTATTCTCCGGCATATTTAATATTGGAATCGGGGCGGGT > U00096/1617788‑1618074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |