Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	U00096	1,617,936	Δ310 bp		[ydeA]–[marC]	[ydeA], [marC]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	U00096	1617936	1618245	310	36 [0]	[0] 35	[ydeA]–[marC]	[ydeA],[marC]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	U00096	= 1617935	0 (0.000)	34 (0.530)	32/290	1.7	100%	coding (908/1191 nt)	ydeA	L‑arabinose exporter
	?	U00096	1618246 =	0 (0.000)					coding (663/666 nt)	marC	inner membrane protein MarC

GCACTGGTCAATGTCGATGATTGGTTATGTGGGCGCGGTGCCTGCTTTTGCCGCGTTAATTTGGTCAATCATTATATTTCGCCGCTGGCCAGTGACACTCGAAGAACAGACGCAATAGTTGAAAGGCCCATTCGGGCCTTTTTTAATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCC  >  U00096/1618101‑1618393                                                                                                                                                  |                                                                                                                                                    gtggtgcgggcattattggcagcgtgattttcggtaaactggttaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtAt                                                                                                                                                    <  1:343671‑M2/2‑1 (MQ=255)         ggcattattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGttt                                                                                                                                           >  1:343686‑M2/138‑148 (MQ=255)           cattattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGtttt                                                                                                                                          <  1:343672‑M2/12‑1 (MQ=255)             ttattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGttt                                                                                                                                           <  1:343673‑M2/11‑1 (MQ=255)              tattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATg                                                                                                                                      >  2:343683‑M2/133‑148 (MQ=255)                ttggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGAt                                                                                                                                    >  2:343696‑M2/131‑148 (MQ=255)                  ggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcggacagtgaaatacacctcggggtATGGTACGTTTTAATGAttt                                                                                                                                  <  1:343674‑M2/20‑1 (MQ=255)                    cagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTc                                                                                                                                 >  1:343685‑M2/127‑147 (MQ=255)                               tcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGtt                                                                                                                     <  2:343675‑M2/33‑1 (MQ=255)                                cggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTta                                                                                                                    >  1:343689‑M2/115‑148 (MQ=255)                                  gtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacatcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTtaat                                                                                                                  >  1:343698‑M2/113‑148 (MQ=255)                                     aactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTtaataat                                                                                                               <  1:343676‑M2/39‑1 (MQ=255)                                       ctgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTtaataataa                                                                                                             <  1:343677‑M2/41‑1 (MQ=255)                                                           tgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATAcc                                                                                         <  1:343679‑M2/61‑1 (MQ=255)                                                           tgcggtggttagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGAGGCCGTTAATAATAAACTGCACACCCATACATAcc                                                                                         <  2:343678‑M2/61‑1 (MQ=255)                                                           gttatgggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATAcc                                                                                         <  1:585409‑M2/61‑1 (MQ=255)                                                            gcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACca                                                                                        <  2:343680‑M2/62‑1 (MQ=255)                                                              gttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACcagc                                                                                      <  1:343681‑M2/64‑1 (MQ=255)                                                                tggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACcagcag                                                                                    >  2:343692‑M2/83‑148 (MQ=255)                                                                         cggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCAt                                                                           <  2:343686‑M2/75‑1 (MQ=255)                                                                                tgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACgg                                                                    <  2:343688‑M2/82‑1 (MQ=255)                                                                                   gctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCAAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGgag                                                                 <  1:343683‑M2/85‑1 (MQ=255)                                                                                    ctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACggg                                                                   >  1:343709‑M2/63‑145 (MQ=255)                                                                                    ctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGgaga                                                                <  2:343691‑M2/86‑1 (MQ=255)                                                                                           tggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACCCCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTc                                                         >  1:343710‑M2/56‑148 (MQ=255)                                                                                           tggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTc                                                         <  1:343682‑M2/93‑1 (MQ=255)                                                                                            ggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCa                                                        <  2:343685‑M2/94‑1 (MQ=255)                                                                                                 gcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGcc                                                   <  2:343687‑M2/99‑1 (MQ=255)                                                                                                    tggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCAcc                                                >  1:343695‑M2/47‑148 (MQ=255)                                                                                                             tgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCccac                                       >  1:343697‑M2/38‑148 (MQ=255)                                                                                                                              agtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTgcgc                      <  1:343690‑M2/128‑1 (MQ=255)                                                                                                                              agtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTgcgc                      >  1:343702‑M2/21‑148 (MQ=255)                                                                                                                                        acctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACAAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGACACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCg            <  2:343684‑M2/138‑1 (MQ=255)                                                                                                                                         cctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGt           <  2:343689‑M2/139‑1 (MQ=255)                                                                                                                                                  aTGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTccc  >  1:343708/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCACTGGTCAATGTCGATGATTGGTTATGTGGGCGCGGTGCCTGCTTTTGCCGCGTTAATTTGGTCAATCATTATATTTCGCCGCTGGCCAGTGACACTCGAAGAACAGACGCAATAGTTGAAAGGCCCATTCGGGCCTTTTTTAATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCC  >  U00096/1618101‑1618393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑