Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | U00096 | 1,617,936 | Δ310 bp | [ydeA]–[marC] | [ydeA], [marC] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | U00096 | 1617936 | 1618245 | 310 | 36 [0] | [0] 35 | [ydeA]–[marC] | [ydeA],[marC] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | U00096 | = 1617935 | 0 (0.000) | 34 (0.530) | 32/290 | 1.7 | 100% | coding (908/1191 nt) | ydeA | L‑arabinose exporter |
? | U00096 | 1618246 = | 0 (0.000) | coding (663/666 nt) | marC | inner membrane protein MarC |
GCACTGGTCAATGTCGATGATTGGTTATGTGGGCGCGGTGCCTGCTTTTGCCGCGTTAATTTGGTCAATCATTATATTTCGCCGCTGGCCAGTGACACTCGAAGAACAGACGCAATAGTTGAAAGGCCCATTCGGGCCTTTTTTAATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCC > U00096/1618101‑1618393 | gtggtgcgggcattattggcagcgtgattttcggtaaactggttaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtAt < 1:343671‑M2/2‑1 (MQ=255) ggcattattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGttt > 1:343686‑M2/138‑148 (MQ=255) cattattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGtttt < 1:343672‑M2/12‑1 (MQ=255) ttattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGttt < 1:343673‑M2/11‑1 (MQ=255) tattggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATg > 2:343683‑M2/133‑148 (MQ=255) ttggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGAt > 2:343696‑M2/131‑148 (MQ=255) ggcagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcggacagtgaaatacacctcggggtATGGTACGTTTTAATGAttt < 1:343674‑M2/20‑1 (MQ=255) cagcgtgattttcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTc > 1:343685‑M2/127‑147 (MQ=255) tcggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGtt < 2:343675‑M2/33‑1 (MQ=255) cggtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTta > 1:343689‑M2/115‑148 (MQ=255) gtaaactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacatcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTtaat > 1:343698‑M2/113‑148 (MQ=255) aactgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTtaataat < 1:343676‑M2/39‑1 (MQ=255) ctgggtaatcagtatgcgtctgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTtaataataa < 1:343677‑M2/41‑1 (MQ=255) tgcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATAcc < 1:343679‑M2/61‑1 (MQ=255) tgcggtggttagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGAGGCCGTTAATAATAAACTGCACACCCATACATAcc < 2:343678‑M2/61‑1 (MQ=255) gttatgggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATAcc < 1:585409‑M2/61‑1 (MQ=255) gcgttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACca < 2:343680‑M2/62‑1 (MQ=255) gttggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACcagc < 1:343681‑M2/64‑1 (MQ=255) tggtgagtacggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACcagcag > 2:343692‑M2/83‑148 (MQ=255) cggcgattgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCAt < 2:343686‑M2/75‑1 (MQ=255) tgcgctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACgg < 2:343688‑M2/82‑1 (MQ=255) gctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCAAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGgag < 1:343683‑M2/85‑1 (MQ=255) ctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACggg > 1:343709‑M2/63‑145 (MQ=255) ctgttgctggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGgaga < 2:343691‑M2/86‑1 (MQ=255) tggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACCCCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTc > 1:343710‑M2/56‑148 (MQ=255) tggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTc < 1:343682‑M2/93‑1 (MQ=255) ggtgtgcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCa < 2:343685‑M2/94‑1 (MQ=255) gcctggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGcc < 2:343687‑M2/99‑1 (MQ=255) tggcattgctgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCAcc > 1:343695‑M2/47‑148 (MQ=255) tgttacctgcggcgaacagtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCccac > 1:343697‑M2/38‑148 (MQ=255) agtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTgcgc < 1:343690‑M2/128‑1 (MQ=255) agtgaaatacacctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTgcgc > 1:343702‑M2/21‑148 (MQ=255) acctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACAAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGACACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCg < 2:343684‑M2/138‑1 (MQ=255) cctcggggtATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGt < 2:343689‑M2/139‑1 (MQ=255) aTGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTccc > 1:343708/1‑148 (MQ=255) | GCACTGGTCAATGTCGATGATTGGTTATGTGGGCGCGGTGCCTGCTTTTGCCGCGTTAATTTGGTCAATCATTATATTTCGCCGCTGGCCAGTGACACTCGAAGAACAGACGCAATAGTTGAAAGGCCCATTCGGGCCTTTTTTAATGGTACGTTTTAATGATTTCCAGGATGCCGTTAATAATAAACTGCACACCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCC > U00096/1618101‑1618393 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |