breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
MC JC 1,397,381 Δ13,756 bp [ynaJ]–[ttcA] 17 genes
MC JC 1,617,936 Δ310 bp [ydeA]–[marC] [ydeA], [marC]
MC JC 1,978,503 Δ776 bp insB5–insA5 insB5, insA5
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 4,255,502 T→C Q322R (CAG→CGG)  plsB ← glycerol‑3‑phosphate 1‑O‑acyltransferase
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ U00096 3423756–3424234 3424576–3424238 5–821 24 [23] [23] 24 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 1207790 =2 (0.030)57 (1.000) 49/258 0.2 95.2% coding (290/630 nt) ycfK protein StfP
?U00096 1209619 = 4 (0.070)intergenic (‑500/‑66) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 12078052 (0.030)43 (0.760) 39/258 0.7 93.7% coding (305/630 nt) ycfK protein StfP
?U00096 = 1209602 4 (0.070)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 12994980 (0.000)94 (1.510) 78/282 0.0 100% intergenic (+253/‑69) ychE/insH21 MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
?U00096 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein