mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 30.4% | 60.9 / 36.5 | 46 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 445,148 | 0 | T | A | 20.0% | 100.9 / 11.1 | 45 | F156I (TTC→ATC) | yajQ | nucleotide binding protein YajQ |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 781369 = | 43 (0.670) | 20 (0.320) +GAG |
7/284 | 7.3 | 39.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521006 | 21 (0.330) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | U00096 | 781369 = | 43 (0.670) | 18 (0.280) +G |
5/288 | 8.3 | 36.9% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521128 | 19 (0.300) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 590798 = | 72 (1.130) | 3 (0.050) | 3/290 | 9.6 | 3.9% | coding (157/2973 nt) | nfrA | exopolysaccharide secretion system outer membrane protein NfrA |
| ? | U00096 | = 2025868 | 75 (1.170) | coding (358/816 nt) | yedP | putative mannosyl‑3‑phosphoglycerate phosphatase | |||||