Predicted mutation
evidence seq id position mutation annotation gene description
JC JC U00096 1,618,868 IS2 (–) +5 bp coding (37‑41/666 nt) marC ← inner membrane protein MarC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 1618868 =1 (0.010)121 (1.170) 90/292 0.1 99.2% coding (41/666 nt) marC inner membrane protein MarC
?U00096 = 2070271 NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? U00096 = 16188721 (0.010)77 (0.750) 63/292 1.0 98.7% coding (37/666 nt) marC inner membrane protein MarC
?U00096 = 1651548 NA (NA)noncoding (706/706 nt) IS2 repeat region

Only 100 of 189 total aligned reads displayed.

CGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAAC  >  U00096/1618725‑1619019
                                                                                                                                                   |                                                                                                                                                   
tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaaccacc                                                                                                                                                    <  2:1043311‑M1/6‑1 (MQ=255)
 ttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAccacca                                                                                                                                                   >  2:1043314‑M1/143‑149 (MQ=255)
 ttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAccacca                                                                                                                                                   >  1:1112263‑M1/143‑149 (MQ=255)
 ggCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtg                                                                                                                                                   >  2:1112758‑M1/1‑147 (MQ=255)
    gTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGTCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACCGCACtggat                                                                                                                                                >  1:549837‑M1/1‑144 (MQ=255)
      aaTACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACTATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggattt                                                                                                                                              <  1:549839‑M1/149‑8 (MQ=255)
             caccaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgccccta                                                                                                                                       >  1:1112753‑M1/1‑135 (MQ=255)
              cgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAAt                                                                                                                                      >  1:1043322‑M1/130‑149 (MQ=255)
              accaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctat                                                                                                                                      <  2:549841‑M1/149‑16 (MQ=255)
                   tctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAAt                                                                                                                                      >  1:1043327‑M1/125‑144 (MQ=255)
                      gcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTaa                                                                                                                              >  2:1112303‑M1/122‑149 (MQ=255)
                      gcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTaa                                                                                                                              <  1:549870‑M1/28‑1 (MQ=255)
                       atgGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccaga                                                                                                                             <  2:549843‑M1/149‑25 (MQ=255)
                            aaaTACGTACACCGAGGCCATAAAAGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCATGCCAATAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatct                                                                                                                        <  1:549846‑M1/149‑30 (MQ=255)
                              ccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCt                                                                                                                      <  1:1043337‑M1/36‑1 (MQ=255)
                              aTACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGATCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgt                                                                                                                      <  2:549847‑M1/149‑32 (MQ=255)
                                  ccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACa                                                                                                                  <  2:1043345‑M1/40‑1 (MQ=255)
                                     taagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATtg                                                                                                               <  1:1043347‑M1/43‑1 (MQ=255)
                                      acCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcactt                                                                                                              <  1:549850‑M1/149‑40 (MQ=255)
                                      aagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATtgg                                                                                                              >  2:1112230‑M1/106‑149 (MQ=255)
                                       ccGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcactta                                                                                                             <  1:549852‑M1/149‑41 (MQ=255)
                                            tcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGgttg                                                                                                        <  2:1112204‑M1/50‑1 (MQ=255)
                                            tcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtaaggagatacagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAAACTAACATTGGTGgttg                                                                                                        <  2:1043350‑M1/50‑1 (MQ=255)
                                            gCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                        >  2:1608483‑M1/1‑104 (MQ=255)
                                              cATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAATGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccatt                                                                                                      >  2:1608449‑M1/1‑102 (MQ=255)
                                                  aaCGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaa                                                                                                  <  2:549853‑M1/149‑52 (MQ=255)
                                                  aaCGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaa                                                                                                  <  1:549854‑M1/149‑52 (MQ=255)
                                                       ttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTgtgt                                                                                             >  2:1043360‑M1/89‑149 (MQ=255)
                                                       ttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTgtgt                                                                                             <  2:1112206‑M1/61‑1 (MQ=255)
                                                        tctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTa                                                                                            <  2:549875‑M1/62‑1 (MQ=255)
                                                        tGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgc                                                                                            >  2:1112727‑M1/1‑92 (MQ=255)
                                                        tGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgc                                                                                            <  2:549856‑M1/149‑58 (MQ=255)
                                                          tccaatgactagtctaacaactagtagtacgactatcacttatttaagtgatattggttgtctggagattcagggggcccgtctaACCACCAGCCCCCGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATc                                                                                          >  2:1112198‑M1/86‑149 (MQ=255)
                                                            caatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTg                                                                                        <  1:549860‑M1/66‑1 (MQ=255)
                                                                 actagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTa                                                                                   <  2:1043366‑M1/71‑1 (MQ=255)
                                                                   ttCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagata                                                                                 <  2:549858‑M1/149‑69 (MQ=255)
                                                                    agtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCa                                                                                >  2:1607951‑M1/76‑149 (MQ=255)
                                                                    agtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCa                                                                                >  1:1112224‑M1/76‑149 (MQ=255)
                                                                    agtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCa                                                                                >  1:1112199‑M1/76‑149 (MQ=255)
                                                                        cACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttcacccattacaagcccgctgccgcagatagtccc                                                                            >  2:562245‑M1/1‑76 (MQ=255)
                                                                         aaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGaa                                                                           <  1:549889‑M1/79‑1 (MQ=255)
                                                                          aaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGaaa                                                                          >  2:549866‑M1/70‑149 (MQ=255)
                                                                          aaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGaaa                                                                          >  2:1589018‑M1/70‑149 (MQ=255)
                                                                          aaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGaaa                                                                          <  2:549873‑M1/80‑1 (MQ=255)
                                                                             actagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGt                                                                       <  1:549909‑M1/83‑1 (MQ=255)
                                                                              tCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggc                                                                       >  1:1608440‑M1/1‑70 (MQ=255)
                                                                              ctagtattaagaatatcacttatttaagtgatattggttgtctggagattcagggggcaagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGATATCAGATAAAAGta                                                                      <  2:549902‑M1/84‑1 (MQ=255)
                                                                               cATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcga                                                                     <  2:1112781‑M1/149‑81 (MQ=255)
                                                                                 tGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagc                                                                   <  1:1112779‑M1/149‑83 (MQ=255)
                                                                                 gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTTTCAGCGAAAAGTATaa                                                                   >  2:549870‑M1/63‑149 (MQ=255)
                                                                                   attaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCCGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAgg                                                                 <  2:549893‑M1/89‑1 (MQ=255)
                                                                                    ttaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAggg                                                                >  2:549862‑M1/60‑149 (MQ=255)
                                                                                     gcctgccAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgata                                                               <  2:1112776‑M1/149‑87 (MQ=255)
                                                                                      aagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGt                                                              >  2:549868‑M1/58‑149 (MQ=255)
                                                                                      aagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGt                                                              >  2:1043277‑M1/58‑149 (MQ=255)
                                                                                       agactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTa                                                             >  1:708977‑M1/57‑149 (MQ=255)
                                                                                        gactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTaa                                                            <  2:549883‑M1/94‑1 (MQ=255)
                                                                                         gccAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccc                                                           >  2:1608431‑M1/1‑59 (MQ=255)
                                                                                           tatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTACCATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACa                                                         <  1:549923‑M1/97‑1 (MQ=255)
                                                                                           tatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACa                                                         >  1:1043311‑M1/53‑149 (MQ=255)
                                                                                            atcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACaa                                                        <  2:549876‑M1/98‑1 (MQ=255)
                                                                                             ggCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcg                                                       >  1:1112772‑M1/1‑55 (MQ=255)
                                                                                             ggCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccaagcg                                                       >  1:1112771‑M1/1‑55 (MQ=255)
                                                                                               acttatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGa                                                     >  1:708989‑M1/49‑149 (MQ=255)
                                                                                                cttatttaagtgatattggttgtctggagattcagggggccaggctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTaaa                                                           >  1:1043264‑M1/48‑142 (MQ=255)
                                                                                                  tatttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATaa                                                  <  1:549911‑M1/104‑1 (MQ=255)
                                                                                                   atttaagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATaa                                                  <  1:549887‑M1/104‑1 (MQ=255)
                                                                                                    aaaTAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatg                                                >  2:1112765‑M1/1‑48 (MQ=255)
                                                                                                       aagtgatattggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGAGGTAAACAAGGATAAAgtgt                                             >  1:1112210‑M1/41‑149 (MQ=255)
                                                                                                        agtgatattggttgtctggagctgcagggggccactctaACCACCAGCCCCAGGCCAATTGCATTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTCTAAGGGGTACACAAGGATAAAGTGTc                                            >  2:549864‑M1/40‑149 (MQ=255)
                                                                                                              attggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCtt                                      <  1:549880‑M1/116‑1 (MQ=255)
                                                                                                              aCAGTTGTTAATGGGTTAGCTAACGGCAGCTACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccat                                      <  2:1112760‑M1/149‑112 (MQ=255)
                                                                                                              aCAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccat                                      >  2:1112762‑M1/1‑38 (MQ=255)
                                                                                                               ttggttggctggagatgcagggggccaggctaACCTCCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCttt                                     >  2:1043326‑M1/33‑149 (MQ=255)
                                                                                                                tggttgtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTta                                    <  1:549903‑M1/118‑1 (MQ=255)
                                                                                                                     ttAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttat                               <  2:1112753‑M1/149‑119 (MQ=255)
                                                                                                                     ttAATGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttat                               >  2:1112754‑M1/1‑31 (MQ=255)
                                                                                                                     gtctggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTtagctag                               <  2:549879‑M1/123‑1 (MQ=255)
                                                                                                                       aaTGGGTTAGCTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataa                             <  2:1112750‑M1/149‑121 (MQ=255)
                                                                                                                        tggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCt                            >  2:1112201‑M1/24‑149 (MQ=255)
                                                                                                                         ggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCtt                                      <  1:549894‑M1/116‑1 (MQ=255)
                                                                                                                         ggagattcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCtt                           <  2:549897‑M1/127‑1 (MQ=255)
                                                                                                                          gcgttAGCTAACGGCAGCAACACCACgggatttgcccctataattccagacatctgttatcacttcacccattacaagcccgctgccgcagatattcccgtggcgagcgacaaccccgcgcactatgcggatgccatgcgttataatgc                          <  2:549837‑M1/147‑124 (MQ=255)
                                                                                                                              ttcagggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATc                      <  1:549918‑M1/132‑1 (MQ=255)
                                                                                                                                 cTAACGGCAGCAACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgc                                         <  1:1112763‑M1/127‑109 (MQ=255)
                                                                                                                                 agggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCa                   <  2:549890‑M1/135‑1 (MQ=255)
                                                                                                                                   ggggccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCAtt                 >  1:1112204‑M1/13‑149 (MQ=255)
                                                                                                                                      gccagtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGaa              <  2:549914‑M1/140‑1 (MQ=255)
                                                                                                                                       gcagcaACACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctct              <  1:1112739‑M1/148‑136 (MQ=255)
                                                                                                                                          gtctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCAt                  >  1:1043274‑M1/6‑141 (MQ=255)
                                                                                                                                            ctaACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAAc        >  1:1607972‑M1/4‑149 (MQ=255)
                                                                                                                                            aaCACCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaagg        >  2:1112734‑M1/1‑8 (MQ=255)
                                                                                                                                             acacCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccaatcgttataatgctcgaacgcctctgcaaggt       >  1:1112731‑M1/1‑7 (MQ=255)
                                                                                                                                              aACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACtt      >  2:549860‑M1/2‑149 (MQ=255)
                                                                                                                                               accaccAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTg     <  1:549863/149‑1 (MQ=255)
                                                                                                                                                ccactggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttct    <  1:1112726‑M1/149‑146 (MQ=255)
                                                                                                                                                ccactggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttct    >  1:1112728‑M1/1‑4 (MQ=255)
                                                                                                                                                  actggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttcttt  >  2:1112725‑M1/1‑2 (MQ=255)
                                                                                                                                                  actggatttgcccctatatttccagacatctgttatcacttaacccatacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttg  >  2:1112723‑M1/1‑2 (MQ=255)
                                                                                                                                                   ctggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttcttt  <  1:708553‑M1/148‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAAC  >  U00096/1618725‑1619019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.