breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
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evidence | position | mutation | annotation | gene | description |
MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
RA | 1,148,444 | Δ1 bp | coding (824/1071 nt) | plsX → | putative phosphate acyltransferase |
MC JC | 1,397,381 | Δ13,756 bp | [ynaJ]–[ttcA] | 17 genes [ynaJ], uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, ynaN, zntB, fnrS, ynaL, dbpA, [ttcA] |
|
JC JC | 1,618,850 | IS5 (–) +4 bp | coding (56‑59/666 nt) | marC ← | inner membrane protein MarC |
MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
MC JC | 4,118,444 | Δ2,089 bp | zapB–[hslU] | zapB, rraA, menA, [hslU] | |
RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
Unassigned missing coverage evidence | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | U00096 | 3423709–3424234 | 3424592–3424238 | 5–884 | 131 [128] | [125] 129 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
Unassigned new junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | U00096 | 1207790 = | 14 (0.060) | 195 (0.870) | 137/260 | 0.3 | 93.0% | coding (290/630 nt) | ycfK | protein StfP |
? | U00096 | 1209619 = | 17 (0.080) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
* | ? | U00096 | = 1207805 | 14 (0.060) | 172 (0.760) | 118/260 | 1.0 | 92.1% | coding (305/630 nt) | ycfK | protein StfP |
? | U00096 | = 1209602 | 17 (0.080) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
* | ? | U00096 | = 1299498 | 0 (0.000) | 321 (1.300) | 182/284 | 0.0 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
? | U00096 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
* | ? | U00096 | 3997549 = | 260 (1.030) | 249 (1.010) | 157/284 | 0.2 | 50.1% | coding (367/717 nt) | yigB | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
? | U00096 | = 3999828 | 243 (0.990) | coding (1846/2163 nt) | uvrD | DNA helicase II |