mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 35.6% | 208.4 / 219.5 | 202 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,708,766 | 0 | C | T | 22.9% | 37.8 / 17.6 | 42 | V616V (GTC→GTT) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 1,708,930 | 0 | C | A | 21.9% | 213.7 / 13.7 | 105 | P671Q (CCG→CAG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 2,947,591 | 0 | A | . | 20.8% | 152.5 / 36.6 | 53 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 696863 = | 63 (0.250) | 50 (0.220) +GAAGAAACAATC |
22/268 | 16.9 | 25.7% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 252 (1.000) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | = 1287084 | 41 (0.160) | 22 (0.100) | 11/252 | 21.2 | 16.0% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 196 (0.900) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | = 2357873 | 169 (0.670) | 18 (0.070) | 13/292 | 22.0 | 9.6% | intergenic (+70/+169) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | U00096 | 2357886 = | 171 (0.680) | intergenic (+83/+156) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase | |||||
| * | ? | U00096 | = 2560972 | 107 (0.420) | 10 (0.050) | 9/252 | 22.4 | 9.2% | intergenic (+74/‑396) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| ? | U00096 | 2561043 = | 105 (0.480) | intergenic (+145/‑325) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM | |||||
| * | ? | U00096 | 4542682 = | 332 (1.310) | 11 (0.050) | 9/274 | 23.5 | 3.3% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 337 (1.420) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 4542690 | 336 (1.330) | 8 (0.030) | 8/274 | 24.2 | 2.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 337 (1.420) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 1287084 | 41 (0.160) | 10 (0.050) | 6/254 | 24.6 | 7.8% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | = 4175537 | 201 (0.910) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | U00096 | = 2818077 | 207 (0.820) | 5 (0.020) | 5/252 | 25.3 | 2.7% | noncoding (59/77 nt) | argZ | tRNA‑Arg |
| ? | U00096 | 2818358 = | 182 (0.830) | intergenic (‑84/+115) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | U00096 | 2817923 = | 170 (0.670) | 5 (0.020) | 5/252 | 25.3 | 2.9% | intergenic (‑63/+136) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | U00096 | = 2818057 | 194 (0.890) | intergenic (‑197/+2) | argQ/argZ | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | U00096 | = 523384 | 204 (0.810) | 3 (0.010) | 3/270 | 27.9 | 1.5% | coding (124/4281 nt) | rhsD | protein RhsD |
| ? | U00096 | 2498107 = | 211 (0.900) | coding (189/1239 nt) | alaC | glutamate‑‑pyruvate aminotransferase AlaC | |||||