breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
RA 1,152,159 T→G F74C (TTC→TGC)  fabF → 3‑oxoacyl‑[acyl carrier protein] synthase 2
MC JC 1,397,381 Δ13,756 bp [ynaJ]–[ttcA] 17 genes
RA 1,618,806 Δ1 bp coding (103/666 nt) marC ← inner membrane protein MarC
MC JC 1,978,503 Δ776 bp insB5–insA5 insB5, insA5
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ U00096 3423714–3424234 3424591–3424238 5–878 99 [97] [98] 100 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 1207790 =13 (0.070)123 (0.720) 94/260 1.2 88.0% coding (290/630 nt) ycfK protein StfP
?U00096 1209619 = 22 (0.130)intergenic (‑500/‑66) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 120780513 (0.070)115 (0.670) 100/260 0.9 87.3% coding (305/630 nt) ycfK protein StfP
?U00096 = 1209602 22 (0.130)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 12994980 (0.000)299 (1.600) 180/284 0.0 100% intergenic (+253/‑69) ychE/insH21 MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
?U00096 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein