mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 43.9% | 72.8 / 193.1 | 141 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,708,709 | 0 | T | A | 27.5% | 36.8 / 23.6 | 57 | R597R (CGT→CGA) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 1,708,901 | 0 | A | C | 22.7% | 141.2 / 10.5 | 80 | R661R (CGA→CGC) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 2,947,467 | 0 | A | C | 20.0% | 160.6 / 30.8 | 65 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 696863 = | 55 (0.290) | 60 (0.340) +GAAGAAACAATC |
22/268 | 13.9 | 34.2% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 197 (1.020) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | = 1287084 | 52 (0.270) | 28 (0.170) | 15/252 | 16.1 | 23.6% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 136 (0.820) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | 781369 = | 104 (0.540) | 59 (0.310) +G |
17/290 | 16.9 | 43.9% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 48 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 4542690 | 300 (1.560) | 15 (0.080) | 15/274 | 17.1 | 5.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 224 (1.240) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 781577 = | 116 (0.600) | 89 (0.470) +G |
13/290 | 18.8 | 52.2% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 48 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 208 (1.080) | 54 (0.280) +G |
13/290 | 18.8 | 29.8% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 48 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 4542682 = | 306 (1.590) | 8 (0.040) | 8/274 | 21.0 | 3.0% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 224 (1.240) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 1287262 | 95 (0.490) | 5 (0.030) | 5/250 | 22.0 | 5.6% | noncoding (67/85 nt) | tyrV | tRNA‑Tyr |
| ? | U00096 | 1287382 = | 86 (0.520) | intergenic (‑54/+156) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | U00096 | = 2560972 | 80 (0.420) | 4 (0.020) | 4/252 | 23.0 | 5.1% | intergenic (+74/‑396) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| ? | U00096 | 2561043 = | 79 (0.480) | intergenic (+145/‑325) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM | |||||
| * | ? | U00096 | 3123895 = | 189 (0.980) | 3 (0.020) | 3/288 | 25.5 | 1.5% | coding (337/405 nt) | glcG | putative heme‑binding protein GlcG |
| ? | U00096 | 4055324 = | 214 (1.130) | coding (1016/1050 nt) | glnL | protein histidine kinase NtrB | |||||