| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | U00096 | 1,618,499 | Δ7 bp | coding (404‑410/666 nt) | marC ← | inner membrane protein MarC |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | U00096 | 1618499 | 1618505 | 7 | 56 [0] | [0] 55 | marC | inner membrane protein MarC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | = 1618498 | 0 (0.000) | 55 (0.620) | 40/290 | 2.2 | 100% | coding (411/666 nt) | marC | inner membrane protein MarC |
| ? | U00096 | 1618506 = | 0 (0.000) | coding (403/666 nt) | marC | inner membrane protein MarC | |||||
GCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGA > U00096/1618351‑1618642 | gCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAatc < 2:471731/148‑1 (MQ=255) cacaaGCCGCATAATTGCGCCGGAGCTGCGTAGGCTGCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtg < 1:471732‑M1/147‑3 (MQ=255) ccaGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggt > 1:471775‑M1/1‑143 (MQ=255) caGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttc < 1:471733‑M1/148‑7 (MQ=255) cGCATAATTGCGCCGGAGCTGCGTAGGCGTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccgg < 2:471734‑M1/148‑11 (MQ=255) ttGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggca > 1:471773‑M1/1‑131 (MQ=255) cGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtactt < 1:471735‑M1/148‑24 (MQ=255) cGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtactt < 2:471736‑M1/148‑24 (MQ=255) ggAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCCGCGGCTGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtactt < 1:471737‑M1/147‑24 (MQ=255) ggAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttg < 2:471738‑M1/148‑25 (MQ=255) cTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcat < 2:471739‑M1/148‑29 (MQ=255) cTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcat < 2:471740‑M1/148‑29 (MQ=255) cGTAGGCTTCCCCACAAAATATCCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCCGCGAAGGTGGAACTCTGCAGCACTGAGGACGCCGAGCTAATAATCtgcttcccgaaccggcagtacttggcattgc > 2:471799‑M1/1‑117 (MQ=255) cGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgc > 1:471778‑M1/1‑117 (MQ=255) cGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgc > 2:471741‑M1/1‑117 (MQ=255) gTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCATCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGATCTAATAATCtggttcccggaccggcagtactt < 1:471743‑M1/139‑24 (MQ=255) gTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGAGCATCGGCGGCGCAACCATCAGTACCCAATCATCTAAGGTTTAACTCTGACTCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtactt < 1:471744‑M1/139‑24 (MQ=255) tAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggcccggcagtactttgcattgcca > 2:471765‑M1/1‑115 (MQ=255) aGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccag < 1:471746‑M1/148‑35 (MQ=255) gCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcg < 1:692372‑M1/148‑37 (MQ=255) cTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcgg > 2:471785‑M1/1‑111 (MQ=255) ccccACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcac > 1:471800‑M1/1‑108 (MQ=255) ccACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaa > 2:471777‑M1/1‑106 (MQ=255) ccACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggctcccggaccggcagtacttggcattgccagcggcacaa > 1:471786‑M1/1‑106 (MQ=255) cacaAAATAACCGCCACAAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACACAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggacagtcagtacttggcattgccagcggcacaaa > 1:471764‑M1/1‑105 (MQ=255) acaAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaag > 1:471788‑M1/1‑104 (MQ=255) aaaTAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggca > 2:471793‑M1/1‑101 (MQ=255) aCCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatatt < 2:471747‑M1/148‑53 (MQ=255) ccGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattg < 2:471748‑M1/148‑54 (MQ=255) ccGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattg < 2:471749‑M1/148‑54 (MQ=255) cGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattgg > 2:471791‑M1/1‑94 (MQ=255) gCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggc < 2:471750‑M1/148‑56 (MQ=255) caccaGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcac < 2:471751‑M1/148‑58 (MQ=255) ccaGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactg > 2:471795‑M1/1‑89 (MQ=255) caGGAAAAAGATCAGCGGCGGCGCCACCATCAGTACCCAATCAGCGAAGGTTGATCTCTGACGCACTGTGGACGCCGAGCTATTAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggccctgg > 1:471762‑M1/1‑88 (MQ=255) caGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgg > 2:471770‑M1/1‑88 (MQ=255) gAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggtt < 2:471753‑M1/148‑64 (MQ=255) gAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatat > 1:471752‑M1/1‑85 (MQ=255) aaaaaGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAATGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggaagtacttggcattgccagcggcacaaaggcaatattggcactgggttc < 1:471755‑M1/148‑65 (MQ=255) aaaaaGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttc < 2:471754‑M1/148‑65 (MQ=255) aTCCGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttc < 2:471757‑M1/148‑71 (MQ=255) aTCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttc < 2:471758‑M1/148‑71 (MQ=255) aTCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACGCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttc < 1:471756‑M1/148‑71 (MQ=255) cAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttcc < 1:471759‑M1/147‑72 (MQ=255) aGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccag > 1:471790‑M1/1‑75 (MQ=255) gcggcgCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctct > 2:471792‑M1/1‑71 (MQ=255) aTCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgct > 2:471796‑M1/1‑60 (MQ=255) aTCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccg > 1:471767‑M1/1‑49 (MQ=255) gtgGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaa > 2:471787‑M1/1‑21 (MQ=255) tgGACGCCGAGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaag > 2:471768‑M1/1‑20 (MQ=255) aGCTAATAATCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaagagcatccga > 1:471783‑M1/1‑11 (MQ=255) aataatCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaagagcatccgaaaac > 2:471782‑M1/1‑7 (MQ=255) ataatCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaagcgcatccgaaaacc > 2:471813‑M1/1‑6 (MQ=255) ataatCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaagagcatccgaaaacc > 1:471801‑M1/1‑6 (MQ=255) aatCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaagagcatccgaaaaccga > 2:471802‑M1/1‑4 (MQ=255) aatCtggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgcttttcgcctccggtgaatcaatcgctttctgttgcggaaagagcatccgaaaaccga > 2:471803‑M1/1‑4 (MQ=255) | GCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGA > U00096/1618351‑1618642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |