mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 41.1% | 176.9 / 305.5 | 238 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 2,947,591 | 0 | A | . | 26.2% | 174.4 / 61.3 | 66 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | U00096 | 2,947,467 | 0 | A | C | 25.4% | 144.9 / 33.6 | 59 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 422,429 | 0 | T | G | 25.0% | 428.1 / 33.4 | 198 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 935,584 | 0 | A | T | 20.2% | 195.3 / 25.3 | 121 | P787P (CCA→CCT) | ftsK | cell division DNA translocase FtsK |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 152391 = | 268 (0.960) | 88 (0.320) | 32/292 | 18.4 | 24.7% | coding (422/570 nt) | yadM | putative fimbrial protein YadM |
| ? | U00096 | = 275149 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | U00096 | = 152394 | 259 (0.940) | 73 (0.260) | 28/290 | 19.7 | 22.0% | coding (419/570 nt) | yadM | putative fimbrial protein YadM |
| ? | U00096 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | U00096 | = 1287084 | 75 (0.270) | 38 (0.160) | 17/252 | 22.3 | 20.3% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 233 (0.970) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | 781369 = | 158 (0.570) | 89 (0.320) +G |
18/290 | 24.0 | 44.5% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 66 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287262 | 158 (0.570) | 13 (0.050) | 11/250 | 25.6 | 9.0% | noncoding (67/85 nt) | tyrV | tRNA‑Tyr |
| ? | U00096 | 1287382 = | 128 (0.540) | intergenic (‑54/+156) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | U00096 | 152391 = | 268 (0.960) | 17 (0.060) | 15/292 | 25.7 | 6.0% | coding (422/570 nt) | yadM | putative fimbrial protein YadM |
| ? | U00096 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | U00096 | 781369 = | 158 (0.570) | 63 (0.230) +GAAG |
13/284 | 26.4 | 35.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521006 | 83 (0.300) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | U00096 | 781577 = | 164 (0.590) | 128 (0.460) +G |
12/290 | 27.3 | 52.8% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 66 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 294 (1.060) | 82 (0.300) +G |
12/290 | 27.3 | 31.4% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 66 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287084 | 75 (0.270) | 13 (0.050) | 7/254 | 28.7 | 7.8% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | = 4175537 | 241 (0.990) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||