mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 40.0% | 124.0 / 192.2 | 156 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 422,429 | 0 | T | G | 21.1% | 282.6 / 18.0 | 134 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 1,537,954 | 0 | G | T | 20.3% | 329.9 / 38.0 | 138 | L300L (CTC→CTA) | narY | nitrate reductase Z subunit beta |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 4542682 = | 298 (1.510) | 18 (0.100) | 17/274 | 17.5 | 6.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 231 (1.250) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 1287084 | 66 (0.340) | 26 (0.150) | 13/252 | 18.3 | 19.7% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 155 (0.910) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | = 4542690 | 295 (1.500) | 14 (0.080) | 14/274 | 18.9 | 5.2% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 230 (1.240) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 781369 = | 104 (0.530) | 50 (0.260) +GAAG |
15/284 | 18.9 | 37.7% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521006 | 66 (0.340) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | U00096 | 781577 = | 109 (0.550) | 78 (0.410) +GAAG |
9/284 | 22.3 | 47.8% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521006 | 66 (0.340) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 219 (1.110) | 43 (0.220) +GAAG |
9/284 | 22.3 | 23.7% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521006 | 66 (0.340) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | U00096 | = 2357873 | 128 (0.650) | 16 (0.080) | 9/292 | 22.7 | 11.0% | intergenic (+70/+169) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | U00096 | 2357886 = | 132 (0.670) | intergenic (+83/+156) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase | |||||
| * | ? | U00096 | = 1287084 | 66 (0.340) | 6 (0.040) | 5/254 | 23.7 | 5.4% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | = 4175537 | 152 (0.890) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | U00096 | 2213706 = | 206 (1.050) | 3 (0.020) | 3/288 | 27.2 | 1.5% | coding (939/1686 nt) | btsS | high‑affinity pyruvate receptor |
| ? | U00096 | = 3125261 | 189 (0.970) | coding (199/1224 nt) | glcF | glycolate dehydrogenase, putative iron‑sulfur subunit | |||||
| * | ? | U00096 | 534444 = | 167 (0.850) | 3 (0.020) | 3/288 | 27.2 | 1.3% | coding (529/1782 nt) | gcl | glyoxylate carboligase |
| ? | U00096 | 997652 = | 277 (1.430) | intergenic (‑140/‑216) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit | |||||