mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 3,127,417 | 0 | G | A | 34.9% | 197.3 / 181.5 | 170 | P202L (CCT→CTT) | glcD | glycolate dehydrogenase, putative FAD‑linked subunit |
| * | U00096 | 4,296,060 | 0 | C | T | 32.5% | 191.8 / 144.9 | 152 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,552,191 | 0 | C | A | 25.7% | 241.4 / 23.1 | 109 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase N subunit gamma/DNA‑binding transcriptional regulator YddM |
| * | U00096 | 2,947,591 | 0 | A | . | 23.7% | 104.9 / 29.1 | 39 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | U00096 | 4,296,155 | 0 | T | C | 21.4% | 47.9 / 12.6 | 29 | intergenic (+361/+281) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 422,429 | 0 | T | G | 20.3% | 325.2 / 12.5 | 143 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 4542682 = | 272 (1.400) | 34 (0.190) | 33/274 | 11.5 | 11.9% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 248 (1.360) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 4542690 | 266 (1.370) | 26 (0.140) | 25/274 | 14.1 | 9.5% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 244 (1.340) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 696863 = | 63 (0.320) | 53 (0.300) +GAAGAAACAATC |
19/268 | 16.2 | 29.8% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 209 (1.070) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | 781369 = | 101 (0.520) | 61 (0.320) +G |
20/290 | 16.8 | 46.7% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 39 (0.200) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 781577 = | 109 (0.560) | 79 (0.410) +G |
15/290 | 19.1 | 51.8% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 39 (0.200) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287084 | 54 (0.280) | 24 (0.140) | 10/252 | 19.9 | 20.0% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 146 (0.870) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | 780554 = | 185 (0.950) | 52 (0.270) +G |
13/290 | 20.1 | 31.9% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 39 (0.200) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 2818077 | 145 (0.750) | 5 (0.030) | 5/252 | 23.5 | 3.7% | noncoding (59/77 nt) | argZ | tRNA‑Arg |
| ? | U00096 | 2818358 = | 137 (0.820) | intergenic (‑84/+115) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | U00096 | 2817923 = | 129 (0.660) | 4 (0.020) | 4/252 | 24.4 | 3.1% | intergenic (‑63/+136) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | U00096 | = 2818057 | 141 (0.840) | intergenic (‑197/+2) | argQ/argZ | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | U00096 | = 3673213 | 243 (1.250) | 3 (0.020) | 3/270 | 26.2 | 1.4% | coding (800/900 nt) | rcdB | putative DNA‑binding transcriptional regulator YhjC |
| ? | U00096 | 3962562 = | 194 (1.080) | coding (1886/2022 nt) | rep | ATP‑dependent DNA helicase Rep | |||||