mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 379,826 | (C)5→4 | coding (56/276 nt) | frmR ← | DNA‑binding transcriptional repressor FrmR |
| RA | 1,152,159 | T→G | F74C (TTC→TGC) | fabF → | 3‑oxoacyl‑[acyl carrier protein] synthase 2 |
| MC JC | 1,397,381 | Δ13,756 bp | [ynaJ]–[ttcA] | 17 genes [ynaJ], uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, ynaN, zntB, fnrS, ynaL, dbpA, [ttcA] |
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| RA | 1,618,806 | Δ1 bp | coding (103/666 nt) | marC ← | inner membrane protein MarC |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| MC JC | 3,153,487 | Δ15 bp | intergenic (+64/‑62) | metC → / → yghB | cystathionine beta‑lyase/L‑cysteine desulfhydrase/alanine racemase/DedA family protein YghB |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| MC JC | 4,118,499 | Δ3,339 bp | zapB–[hslV] | zapB, rraA, menA, hslU, [hslV] | |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,635,003 | +T | coding (308/870 nt) | rob ← | DNA‑binding transcriptional dual regulator Rob |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | U00096 | 3423688–3424234 | 3424631–3424238 | 5–944 | 104 [103] | [103] 105 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 1207790 = | 26 (0.130) | 168 (0.970) | 122/260 | 0.2 | 84.6% | coding (290/630 nt) | ycfK | protein StfP |
| ? | U00096 | 1209619 = | 38 (0.220) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | U00096 | = 1207805 | 27 (0.140) | 129 (0.740) | 95/260 | 1.3 | 80.6% | coding (305/630 nt) | ycfK | protein StfP |
| ? | U00096 | = 1209602 | 38 (0.220) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | U00096 | = 1299498 | 0 (0.000) | 231 (1.220) | 154/284 | 0.0 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | U00096 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||