breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
JC 162,220 +51 bp intergenic (+131/+243) mrcB → / ← hemL fused glycosyl transferase and transpeptidase/glutamate‑1‑semialdehyde aminotransferase
RA 1,407,587 G→A intergenic (‑84/‑103) ydhL ← / → ydhM conserved protein/predicted DNA‑binding transcriptional regulator
RA 1,486,241 G→A intergenic (‑2088/‑492) thrS ← / → yniD threonyl‑tRNA synthetase/predicted protein
RA 2,073,848 Δ2 bp intergenic (+106/+161) lysV → / ← xapR tRNA‑Lys/DNA‑binding transcriptional activator
RA 2,073,851 Δ1 bp intergenic (+109/+159) lysV → / ← xapR tRNA‑Lys/DNA‑binding transcriptional activator
RA 3,162,768 A→T D5E (GAT→GAA)  glyQ ← glycine tRNA synthetase, alpha subunit
MC JC 3,245,072 Δ82 bp intergenic (‑91/‑736) pyrE ← / → yicC orotate phosphoribosyltransferase/conserved protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ AP012306 213869–214503 217407–215850 1348–3539 123 [120] [116] 127 [rrsH]–[rrlH] [rrsH],ileV,alaV,[rrlH]
* * ÷ AP012306 3468054–3468598 3469831 1234–1778 123 [118] [0] 423 [rrlA]–[rrfA] [rrlA],[rrfA]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP012306 = 235759447 (1.320)421 (1.240) 218/298 0.0 65.3% coding (186/750 nt) yafL predicted lipoprotein and C40 family peptidase
?AP012306 3469832 = 0 (0.000)noncoding (103/120 nt) rrfA 5S ribosomal RNA (rrfA)