mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 162,220 | +51 bp | intergenic (+131/+243) | mrcB → / ← hemL | fused glycosyl transferase and transpeptidase/glutamate‑1‑semialdehyde aminotransferase |
| RA | 1,407,735 | T→G | S16A (TCC→GCC) | ydhM → | predicted DNA‑binding transcriptional regulator |
| RA | 1,438,071 | T→A | I264N (ATC→AAC) | pykF → | pyruvate kinase I |
| RA | 1,486,241 | G→A | intergenic (‑2088/‑492) | thrS ← / → yniD | threonyl‑tRNA synthetase/predicted protein |
| RA | 2,073,848 | Δ2 bp | intergenic (+106/+161) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator |
| RA | 2,073,851 | Δ1 bp | intergenic (+109/+159) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator |
| RA | 2,098,789 | G→T | A200A (GCG→GCT) | yfeU → | predicted PTS component |
| MC JC | 3,245,072 | Δ82 bp | intergenic (‑91/‑736) | pyrE ← / → yicC | orotate phosphoribosyltransferase/conserved protein |
| MC JC | 3,618,650 | Δ13 bp | coding (4088‑4100/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AP012306 | 3371368–3372519 | 3372519 | 1–1152 | 126 [119] | [119] 121 | rrsC | 16S ribosomal RNA (rrnC) |
| * | * | ÷ | AP012306 | 3374865–3375118 | 3375355–3375128 | 11–491 | 121 [119] | [120] 123 | rrlC | 23S ribosomal RNA (rrlC) |