| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 147 (0.780) | 24 (0.160) | 22/114 | 6.1 | 20.4% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 70 (0.460) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/880612‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < NC_012967/904682‑904612 CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA < 1:3321884/72‑1CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA < 1:2799732/72‑1 CACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 2:3672812/72‑1 CACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 1:503141/72‑1 CACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 2:4611946/72‑1 CACCACTGACCACCAACCCAACTTATTGTTTATACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT > 1:402123/1‑72 ACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATG > 1:1206956/1‑72 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG < 2:3360191/72‑1 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG > 2:102154/1‑72 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG < 2:788255/72‑1 CACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG > 1:3196323/1‑72 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGT < 2:4573944/72‑1 CTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTT > 2:6257546/1‑72 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT < 1:2000420/72‑1 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT < 2:4986895/72‑1 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT < 2:5656474/72‑1 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT > 1:4020053/1‑72 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT > 2:806002/1‑72 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG < 2:392520/72‑1 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG > 2:695418/1‑72 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG < 1:6468570/72‑1 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG < 2:5435698/72‑1 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG < 2:6431446/72‑1 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT < 1:3745927/72‑1 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT > 1:3173054/1‑72 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTNTTTGT < 2:360458/72‑1 CCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT < 2:56472/72‑1 TGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATG > 1:5728299/1‑72 TTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCT > 1:3336746/1‑72 TTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCT < 2:3090814/72‑1 TACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTT > 2:5281743/1‑72 ACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTg > 2:2440548/1‑71 AACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATC > 1:1239054/1‑72 ACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCA > 1:4311431/1‑72 CTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCAT < 1:4662821/72‑1 TTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATG > 2:2280619/1‑72 TATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGA > 2:5024445/1‑72 ATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGAT > 2:6195518/1‑72 ATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGAT > 1:2039326/1‑72 TGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGT > 1:907065/1‑72 TTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAG > 1:3680499/1‑72 TCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAA > 2:6557040/1‑72 AACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACT > 2:6107191/1‑72 CCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTT < 2:2622854/72‑1 CGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTT > 1:2189181/1‑72 TTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTT > 1:6296494/1‑72 taaATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTA > 2:2552776/4‑72 TACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTA < 2:4311428/72‑1 CATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAAC > 2:5872657/1‑72 ATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACG > 1:5282622/1‑72 AATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATG < 1:1225344/72‑1 tTGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGG < 2:3717421/71‑1 GGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCG > 2:1702831/1‑72 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGA < 1:4442530/72‑1 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGA < 2:3521755/72‑1 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGA > 2:1184153/1‑72 GGTTTTTTGTTGCCTGAAATTTATGCTATTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGA < 1:1750816/72‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC > 2:6301055/1‑72 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC > 1:1584041/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA > 2:2109902/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA > 2:1667424/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA > 1:4352830/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA < 2:2485856/72‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 1:6415921/1‑72 TTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA < 2:1733396/72‑1 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA < 1:2486867/72‑1 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT > 2:5394615/1‑72 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT > 2:2008308/1‑72 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT < 2:6490453/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 1:3229485/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 1:3153207/1‑72 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 1:2533192/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 1:1802262/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 2:1513400/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 2:4262126/72‑1 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG < 1:1097599/72‑1 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG < 2:4961696/72‑1 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG > 2:4364594/1‑72 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC > 2:5731259/1‑72 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG > 2:5779200/1‑72 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 1:1383809/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG > 2:3417383/1‑72 CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/880612‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < NC_012967/904682‑904612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |