| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 147 (0.780) | 24 (0.160) | 22/114 | 6.1 | 20.4% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 70 (0.460) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 104 total aligned reads displayed.
CGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTGAT‑GGGCT‑CCACAA‑AATGGGGACATCAAA > NC_012967/904612‑904751 | cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 2:3417383/72‑1 (MQ=255)cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 1:1383809/1‑72 (MQ=255)cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 2:5779200/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 2:5731259/72‑1 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac > 1:1097599/1‑72 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac < 2:4364594/72‑1 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac > 2:4961696/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 1:3153207/72‑1 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca > 1:3229485/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca > 2:1513400/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca > 1:1802262/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca > 2:4262126/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca > 1:2533192/1‑72 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa < 2:5394615/72‑1 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa > 2:6490453/1‑72 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa < 2:2008308/72‑1 (MQ=255) ttttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaa > 1:2486867/1‑72 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa > 2:1733396/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 1:6415921/72‑1 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa < 2:1667424/72‑1 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa < 1:4352830/72‑1 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa < 2:2109902/72‑1 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa > 2:2485856/1‑72 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c < 1:1584041/72‑1 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c < 2:6301055/72‑1 (MQ=255) gTCGCCATCGTTAAAAAACAGTCCTCCTACCATCAGGATTTTAAAAAGCTTAAA‑TTCAGGCCACcaaaaaac > 2:6005636/1‑70 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAATAGCATAAATTTCAGGCAACAAAAAA‑cc > 1:1750816/1‑72 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑cc > 2:3521755/1‑72 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑cc > 1:4442530/1‑72 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑cc < 2:1184153/72‑1 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑ccc < 2:1702831/72‑1 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCaa > 2:3717421/1‑71 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAtt > 1:1225344/1‑71 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATc > 1:1711690/1‑72 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATc < 2:2878242/72‑1 (MQ=255) aTCGTTAAAAAACAGTGCTTNTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCa < 1:2511193/72‑1 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCa < 1:3859370/72‑1 (MQ=255) tCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCaa < 1:173474/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAACAA‑CCCATCAA‑c > 2:4552721/1‑72 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑c < 2:6637317/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑c < 2:2660947/72‑1 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑cc < 1:4924559/72‑1 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑cc > 2:4566692/1‑72 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CACATCAA‑cc < 1:283474/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCt > 2:3254469/1‑72 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCt > 2:3929984/1‑72 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCt > 1:135966/1‑72 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCtt < 1:3157950/72‑1 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCtt > 1:1805345/1‑72 (MQ=255) aaaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCCA‑ccctt > 2:2556730/1‑69 (MQ=255) aaaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTg < 2:2358711/72‑1 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCttta > 2:2591996/1‑70 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑a > 2:6404092/1‑72 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑a < 1:3230607/72‑1 (MQ=255) aaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AAcc < 1:2986902/72‑1 (MQ=255) cAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGa > 2:4479254/1‑72 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGaa < 1:5594785/72‑1 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAAGTNCAGGCAACAAAAAA‑CCCNNNAA‑CCTTG‑AACCGaa > 1:4720610/1‑72 (MQ=255) aGTGCNTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCACCAA‑CCTTG‑AACCGaa < 2:295397/72‑1 (MQ=255) gTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGaaa < 1:4208735/72‑1 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTT‑AACCGAAAt > 1:3617282/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCCTG‑AAACGGAATg > 1:5589253/1‑72 (MQ=255) ttCTAACATCATGATTTTTAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGc < 1:2224622/72‑1 (MQ=255) ttCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGc < 1:433358/72‑1 (MQ=255) ttCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGc < 2:5561449/72‑1 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑gg < 1:1444992/72‑1 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑gg > 1:1722867/1‑72 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑gg < 2:2057091/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCTTAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑ggg < 1:1817470/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑ggg > 1:3036601/1‑72 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑gggg > 2:5325190/1‑72 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGt < 1:1946552/72‑1 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGt < 2:3827469/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAG‑CCTTG‑AACCGAAATGGC‑GGGGtt < 1:4285835/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGtt < 1:1139297/72‑1 (MQ=255) catcatGATTTGAAAGAGCATAGATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGtt < 2:2914982/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTg < 2:2377926/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTg < 1:575402/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTg < 2:4820107/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTg < 2:4938418/72‑1 (MQ=255) tcatGATTTTAAANAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑ACTTGAAACCAAACTGgg‑ggggggg > 1:2117402/1‑69 (MQ=255) gATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTGAT‑ggg < 1:5202068/72‑1 (MQ=255) aaGAGCATAAATTTCAGGCAACAAAAAA‑CCCCTCAA‑CCTTG‑AACCGAAATGGG‑GGGGGTTGT‑GGGCG‑cctaa > 1:3663168/1‑69 (MQ=255) gCATAAATTTCAGGCAACAAAAAA‑CCCCTCAACCCTTA‑AACCAAAATGCG‑GGGGGGGTG‑GGGGT‑CCACac‑aa > 1:2831792/1‑72 (MQ=255) caaaaaTTCCAGAAAAAAAAAAC‑CCAAACAC‑CCTAG‑AACCAAAGTGGG‑GGGGTTGAT‑GGGCT‑CCACAA‑AATg < 2:3613935/69‑1 (MQ=255) cATAAATTTCAGGCAACAAAAAA‑CCAATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTGAT‑GGGCT‑CCACAA‑AATg > 2:6513785/1‑72 (MQ=255) aaaaaTTACAGAAAAAAAAAAC‑CCCACCAC‑CCTGG‑ACCCGAAAGGGG‑GGGGTTGAG‑GGGCT‑CCACAA‑AATgg < 1:1043362/70‑1 (MQ=255) aTAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGGTGAT‑GGGCT‑CCACAA‑AAAgg > 1:6540121/1‑72 (MQ=255) tAAATTTCAGGCAACAAAAAACCCCACCAC‑CCTGC‑ACCCCAAATGGG‑GGGGGGCTT‑GGGCC‑CCCCaa‑aaaag > 1:3665431/1‑69 (MQ=255) aaaaaTTCAAGCAAAAAAAAACCCCATCGC‑CCTAG‑AACGGAAGTGGG‑GGGTTTGAT‑GGGCT‑CCACAA‑AATgg < 1:3638899/71‑1 (MQ=255) aaaTTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGGTGAT‑GGGCT‑CCACAA‑AAAgggg > 1:4698259/1‑72 (MQ=255) aTTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTT‑AACCGAAATGGC‑GGGGGTGGT‑GGGGTCCCCCAA‑AATggggc > 1:6027294/1‑71 (MQ=255) tttCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGGTGGT‑GGGCT‑TCACAACAACGGGGaa > 2:6509583/1‑71 (MQ=255) tttCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGGTGAT‑GGGCT‑CCCCAA‑AATAGGGACa > 2:6071807/1‑72 (MQ=255) tatCAGGCAAAAAAAAC‑CCCATCAA‑CCTAA‑AACCGAAATGGG‑GGGTTTGAG‑GGGCT‑CCACAA‑AATGGGGACa < 2:5017321/70‑1 (MQ=255) ttCAGGCAACAAAAAA‑CCCCACAA‑CCTTG‑AACCCAAAAGGCGGGGGTTGAT‑GGCCC‑CCCAAA‑AAGgggggac > 2:51083/1‑69 (MQ=255) ttCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGGTGGTGGGGCT‑CCACAA‑AAGggggcat > 2:5554484/1‑69 (MQ=255) ctCAGGCAACAAAAAACCCCCCCAC‑CCTNT‑AACCAAAACGGCGGGGGTTGGG‑GGGCC‑CCACAA‑AAAggggca > 2:2420831/2‑70 (MQ=255) aGGCAAAAAAAAA‑CCCACCAC‑CCGTG‑AACCGAAATGGC‑GGGGTTGAG‑GGGCT‑CCACAA‑AATGGGGACATCaa < 2:4859719/72‑1 (MQ=255) gccaacaaAAAA‑CCCATCAA‑CCTGG‑AACCGAAATGGC‑GGGGTTGAT‑GGGCT‑CCACAA‑AATGGGGACATCaaa < 1:6449594/70‑1 (MQ=255) | CGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCATCAA‑CCTTG‑AACCGAAATGGC‑GGGGTTGAT‑GGGCT‑CCACAA‑AATGGGGACATCAAA > NC_012967/904612‑904751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |