| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 1142669 = | 111 (0.590) | 3 (0.020) | 3/134 | 14.1 | 1.8% | coding (259/1536 nt) | murJ | murein biosynthesis integral membrane protein MurJ |
| ? | NC_012967 | = 4310192 | 222 (1.250) | coding (977/1503 nt) | proP | glycine betaine/L‑proline transporter ProP | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATGATCACCCACGGTGCGGCGAGCATGCCAGCGACCGTCACAACCGCCAGCGCAAGTGTCAGCAGGCCAGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/1142743‑1142669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGGC < NC_012967/4310192‑4310122 CATGATCACCGACGGTGCGGCGAGCATGCCAGCACCCGTCACAACCGCCAGCGCAAGTGTCAGCAGGCCAGA < 1:367361/72‑1 ATGATCACCCACGGTGCGGCGAGCATGCCAGCGACCGTCATAACCGCCAGCGCAAGTGTCAGCAGGCCAGAA > 1:206126/1‑72 TGATCACCCACGGTGCGGCGAGCATGCCAGCGACCGTCACAACCGCCAGCGCAAGTGTCAGCAGGCCAGAAA > 2:5159523/1‑72 GATCACCCACGGTGCGGCGAGCATGCCAGCGACCGTCACAACCGCCAGCGCAAGTGTCAGCAGGCCAGAAAC > 1:804036/1‑72 AGCGACCGTCACAACCGCCAGCGCAAGTGTCAGCAGGCCAGAAACGGACGACGGCCAAAACGGTCACTCAGC > 1:6030569/1‑72 CAACCGCCAGCGCAAGTGTCAGCAGGCCAGAAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCAC < 2:6030566/72‑1 taCCATAAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCNATCACCGGCTGGACAAACAGCATACCGAT < 2:565002/70‑1 AAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAANCAGCATACCGATCATAAT > 1:2550904/1‑72 AAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGGATACCGATCATAAT < 2:494587/72‑1 AAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAAT > 1:253639/1‑72 AAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAAT > 2:849903/1‑72 acCGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATG < 2:2312865/70‑1 AACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATG > 2:48937/1‑72 AACGAACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATa < 2:2491169/72‑2 AACGAACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATG < 2:826684/72‑1 ACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGG < 1:3982235/72‑1 CGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGGC < 2:1248706/72‑1 CGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGGC > 2:967695/1‑72 CATGATCACCCACGGTGCGGCGAGCATGCCAGCGACCGTCACAACCGCCAGCGCAAGTGTCAGCAGGCCAGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/1142743‑1142669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGGC < NC_012967/4310192‑4310122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |