| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 3894996 | NA (NA) | 177 (0.940) | 104/142 | 0.1 | 98.3% | intergenic (+26/‑162) | ECB_RS25215/rbsD | IS3‑like element IS150 family transposase/D‑ribose pyranase |
| ? | NC_012967 | 3902865 = | 3 (0.020) | coding (270/693 nt) | yieP | FadR/GntR family transcriptional regulator | |||||
Only 100 of 177 total aligned reads displayed.
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/3894926‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGCGGTAAAA > NC_012967/3902865‑3902935 CTCCAATTGAATATCGGAATCATACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA < 2:4443087/72‑1 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA < 1:5039409/72‑1 TCNAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAANTTTTTGGGGTCAGTACACAA > 2:617145/1‑72 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAA < 2:4270617/72‑1 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAA < 2:5889716/72‑1 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATT < 2:3825795/72‑1 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTC > 1:6094/1‑72 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTC > 2:4615723/1‑72 ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCC < 1:1602290/72‑1 ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCC < 2:1105366/72‑1 cTGAATATCGGAATCAGACCTATATGCCNCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCT > 2:2414267/2‑72 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCT > 1:1542110/1‑72 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCT > 2:3676227/1‑72 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTG < 2:826843/72‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTG < 2:2138751/72‑1 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGA > 1:1690618/1‑72 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGA > 2:2671823/1‑72 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATC < 1:2246932/72‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATC < 2:1705413/72‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAAACAATTCCTGATC > 2:5086871/1‑72 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCA > 2:6078890/1‑72 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAG < 1:4899613/72‑1 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAG < 1:1108133/72‑1 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGA > 1:52625/1‑72 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGA < 2:3803651/72‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAA > 2:5678314/1‑72 GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAA < 2:1221183/72‑1 AATCAGACATATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAA > 2:3006744/1‑72 TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATT > 1:2333595/1‑72 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTC > 2:2225970/1‑72 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTC < 2:5945042/72‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCC < 1:1954993/72‑1 AGACCNATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCC < 2:588325/72‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCA > 2:6098401/1‑72 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAG > 2:1464340/1‑72 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAG > 1:867323/1‑72 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAG > 1:1134224/1‑72 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTT < 2:5370351/72‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTT < 1:5702052/72‑1 TATATGCATCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAACAAAATTCCAGTTC < 1:5811219/72‑1 TATGCCTCGTGTTGAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGA > 1:4386855/1‑72 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATT > 2:5808527/1‑72 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATT < 1:2946316/72‑1 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGT > 1:362821/1‑72 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTG < 1:4112754/72‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTAGATTGTG < 1:4007403/72‑1 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTNCTGATCAAGAAAATTCCAGTTCGATTGTGG > 2:417058/1‑72 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGG > 2:1551586/1‑72 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGC > 1:3376682/1‑72 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGC < 1:6577115/72‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCA > 1:5296928/1‑72 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCAT < 1:2881639/72‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATT > 2:3180288/1‑72 GTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATT > 1:4358125/1‑72 GTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATT < 1:6652920/72‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATT < 1:5927190/72‑1 TTTAACTGTCCAACTTTTTGGGGNCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTA > 1:4281916/1‑72 TTAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTAC > 1:4926972/1‑72 TAACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACC > 1:1739729/1‑72 AACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCTATTGTGGCATTACCC > 1:20740/1‑72 ACTGTCCAACTTTTTGGGGTCAGTACACGATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCG > 2:1319672/1‑72 ACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGTATTACCCG > 2:2180821/1‑72 ACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCG > 1:375042/1‑72 ACTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCAAGTTCGATTGTGGCATTACCCG > 2:5190929/1‑72 CTGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGG > 1:6247269/1‑72 TGTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGG > 2:601246/1‑72 GTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCANNAAAATTCCAGTTCGATTGTGGCATTACCCGGGT < 1:3066421/72‑1 GTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGT > 2:6196597/1‑72 GTCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGT < 2:3561714/72‑1 TCCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGTGTA > 1:2795691/1‑72 CCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTAC > 2:4299036/1‑72 CCAACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTAC < 2:2357608/72‑1 AACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCA < 1:5233794/72‑1 ACTTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAA > 1:6291958/1‑72 TTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATT < 1:4539354/72‑1 TTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATT > 1:2168699/1‑72 TTTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTAACCGGGTACCAATT > 2:1486794/1‑72 TTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCTGGGTACCAATTC > 1:6436289/1‑72 TTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTC < 1:3483015/72‑1 TTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTC > 2:6591278/1‑72 TTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTC < 1:5600239/72‑1 TTTTGGGGTCAGTACACAATTCCTGATCAAGAAAATGCCAGTTCGATTGTGGCATTACCCGGGTACCAATTC < 1:5527636/72‑1 TTTGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGGGTACCAATTCG < 1:2437801/72‑1 TGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCG < 1:6054077/72‑1 TGGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCG < 1:2938565/72‑1 GGGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGG < 1:4419032/72‑1 GGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGT > 2:3246492/1‑72 GGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGT > 1:3822560/1‑72 GGGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGT < 1:3662859/72‑1 GGTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCGATTCGCGGTC < 1:415088/72‑1 GTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCG > 1:4241272/1‑72 GTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCG > 2:1374348/1‑72 GTCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCG > 2:762429/1‑72 TCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGC < 2:5738103/72‑1 TCAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGC < 2:3962431/72‑1 CAGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGCG > 2:2620500/1‑72 AGTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGCGG < 2:4664431/72‑1 GTACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGCGGT < 2:2576508/72‑1 ACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGCGGTAA < 2:1850599/72‑1 ACACAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGCGGTAA > 2:4972631/1‑72 ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/3894926‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATTACCCGGGTACCAATTCGCGGTCGCGGTAAAA > NC_012967/3902865‑3902935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |