| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 4523540 | 42 (0.150) | 9 (0.040) | 8/126 | 16.5 | 11.0% | coding (590/597 nt) | fimE | type 1 fimbria switch DNA invertase FimE |
| ? | NC_012967 | = 4523778 | 109 (0.430) | intergenic (+231/‑251) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/4523463‑4523540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagaagaATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTAC < NC_012967/4523778‑4523708 TACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTNAAAAG > 2:427100/1‑72TACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAG < 1:5514100/72‑1 ACCGCAAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGA < 1:5939434/72‑1 CCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAG > 2:1185851/1‑72 CCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAG > 2:1724322/1‑72 CCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAAGAATCTCATAAACGAAAAATTAAAAAGAGAAG > 1:313219/1‑72 CAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA > 2:9423122/1‑72 CCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAAGTAAAAAGAGAAGAATGAGGAAGATGCGTCGAGC > 2:9734226/1‑72 GGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAACG > 2:4000838/1‑72 ACGAAAAATTAAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAAAGTTAGCTTTACATATAGCGGA > 2:2370709/1‑72 GAAAAATTAAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCCTTACATATAGCGGAGG > 2:339458/1‑72 AAAAATTAAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGT > 2:9839812/1‑72 AATTAAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGNAACGTTAGCTTTACATATAGCGGAGGTGAT > 2:607864/1‑72 TAAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATCTAGCGGAGGTGATGTG > 2:2524252/1‑72 TAAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTG > 2:5393522/1‑72 AAAAAGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGA > 2:2017287/1‑72 AGAGAAGAATGAGGAAGATGGGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATT < 2:8965665/72‑1 AGAGAAGAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATT < 1:2179723/72‑1 cAGAAGAAGGAGGAAGAGGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTA < 2:3423504/71‑1 GNAGAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGANGTGAACTTAAT < 1:967041/72‑1 aaAATGAGGAAGGGGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTT < 2:4675476/70‑1 GAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTA > 1:2308324/1‑72 GAATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTA < 1:1748444/72‑1 GAAGGAGGAGGAGGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTA < 2:977495/72‑1 GAAGGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTA < 2:5127290/72‑1 AATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTAC < 1:1246823/72‑1 TACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/4523463‑4523540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagaagaATGAGGAAGATGCGTCGAGCCACAGAAACGTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTAC < NC_012967/4523778‑4523708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |