| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 4523540 | 42 (0.150) | 9 (0.040) | 8/126 | 16.5 | 11.0% | coding (590/597 nt) | fimE | type 1 fimbria switch DNA invertase FimE |
| ? | NC_012967 | = 4523778 | 109 (0.430) | intergenic (+231/‑251) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 120 total aligned reads displayed.
TGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC > NC_012967/4523707‑4523847 | tGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAt > 2:5001224/1‑72 (MQ=255) gTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAtt > 1:1246823/1‑72 (MQ=255) tAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCCttc > 2:5127290/1‑72 (MQ=255) tAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAttc < 1:2308324/72‑1 (MQ=255) tAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAttc > 1:1748444/1‑72 (MQ=255) aaaTTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCCCCTTCCTCAtttt > 2:4675476/1‑70 (MQ=255) attaagtTCACNTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAttctnc > 1:967041/1‑72 (MQ=255) taattTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCCTCTTCCTCCTtcttctg > 2:3423504/1‑71 (MQ=255) aattTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctct > 1:2179723/1‑72 (MQ=255) aattTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACCCATCTTCCTCATTCTtctct > 2:8965665/1‑72 (MQ=255) attTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctctc > 1:6554303/1‑72 (MQ=255) attTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctctc > 1:1241358/1‑72 (MQ=255) attTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTtctctc > 1:9918674/1‑72 (MQ=255) tttCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTcc > 1:4582342/1‑72 (MQ=255) ttCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCCTCTTCCTCCTTCTTCTCTccc > 2:7989059/1‑71 (MQ=255) ttCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCa > 2:480196/1‑72 (MQ=255) ttCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCa > 1:4764491/1‑72 (MQ=255) tCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGCCGCATCTTCCTCATTCTTCTTTCCac > 2:6561376/1‑71 (MQ=255) cacaTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCaaa > 1:6147980/1‑72 (MQ=255) acctCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCCCTCCaaaa < 1:5133457/69‑1 (MQ=255) acaTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCaaaa > 1:9424545/1‑72 (MQ=255) acaTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCaaaa > 1:1371146/1‑72 (MQ=255) acaTCACCTCCGCTATATGTAAAGCTAACGTTTCTATNGCTCGACGCATCTTCCTNNNTCTTCTCTCCaaaa > 1:7035328/1‑72 (MQ=255) acaTCACCTCCGCCATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCaaaa > 1:6241138/1‑72 (MQ=255) caTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCcaaaa > 2:5596225/1‑72 (MQ=255) caTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCaaaaa < 1:8282843/72‑1 (MQ=255) aTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAac > 1:5104810/1‑72 (MQ=255) aTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAac > 1:4905670/1‑72 (MQ=255) aTCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAac > 1:7601148/1‑72 (MQ=255) tCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCACAAacc > 1:7940425/1‑72 (MQ=255) cACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGCGGCGCGTTCCTCCTTCTTTCCTTCACAAaccc > 2:208529/1‑71 (MQ=255) cACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAacca > 1:6518036/1‑72 (MQ=255) aCCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCCAAcaccac > 2:4242756/1‑72 (MQ=255) aCCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAaccac > 1:9453670/1‑72 (MQ=255) aCCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAaccac > 1:6564571/1‑72 (MQ=255) ccTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAaccacc > 2:9698161/1‑72 (MQ=255) ccTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAaccacc > 1:3107626/1‑72 (MQ=255) cTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCCCCTTCCCCCTTTCTTTCTCCCCAAaacacca > 2:2160989/1‑71 (MQ=255) cTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCt < 2:9544003/72‑1 (MQ=255) tCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTc < 2:1033271/72‑1 (MQ=255) tCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTc < 2:6893659/72‑1 (MQ=255) tCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTc > 1:3564253/1‑72 (MQ=255) ccGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCa > 1:160276/1‑72 (MQ=255) ccGCTAGATGTAAAGCTAACGTTTCTGTGGCTAGACGCATCTTCCTCATTCTTCTCTCCGAAAACCACCTCa > 2:3846543/1‑72 (MQ=255) cGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAt < 1:2781131/72‑1 (MQ=255) gCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATg > 1:9688876/1‑72 (MQ=255) tataTGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTNCTCTCCAAAAACCACCTCATGCa < 1:6348587/72‑1 (MQ=255) atatGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCaa > 1:2297434/1‑72 (MQ=255) atatGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCaa > 1:1770685/1‑72 (MQ=255) atGTAAAGCTAACGTTTCTGTGGNTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAata > 1:6327472/1‑72 (MQ=255) atGTAAAGCTAACGTTTCTGTGGCTCGACGCCTCTTCCTCCTTCTTCTCTCCCAAAAACAACCCATGCAata > 2:7081353/1‑72 (MQ=255) gTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAAtata < 1:1470728/72‑1 (MQ=255) aaaGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATaaa > 1:4944488/1‑72 (MQ=255) aaaGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATaaa > 1:7343953/1‑72 (MQ=255) aaaGCTAACGTTTCTGTGGCTCGACGCATCTTACTCATTCTTCTCTCCAAAAACCACCTCATGCAATATaaa > 1:594813/1‑72 (MQ=255) aaGCTAACGTTTCTGTGGCTCGACGCCTCTTCCTCATTTTTCTCTCCAAAAACCCCCTCCTGCAAAAAAAAc > 2:1420334/1‑72 (MQ=255) aaGCTAACGCTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAAc > 1:6004243/1‑72 (MQ=255) aGCTAACGTTTCTGTGGCTCGACGCCTCTTCCTCATTCTTCTCTCCAAACACCACCTCATGCAATATAAACa > 2:33546/1‑72 (MQ=255) gCTAACGTTTCTGTGGCTCGACGCCTCTTCCTCATTCTTCTCTCCACAAACCACCTCATGCAATATAAACAt > 2:2639672/1‑72 (MQ=255) gCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAt > 1:5554373/1‑72 (MQ=255) ttAACGTTTCTGTGGCTCCACGCATCTTNCTCCTTCTTCTCTCCCAAAAACACCCCCTCCAAAAAAAACATc > 2:3597070/2‑72 (MQ=255) ccaaCGTTCCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATc < 1:1375487/70‑1 (MQ=255) cTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATc > 1:7605152/1‑72 (MQ=255) cTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATc > 1:7564624/1‑72 (MQ=255) cTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATc > 1:7655096/1‑72 (MQ=255) tAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCt > 2:6498134/1‑72 (MQ=255) aaCGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCta < 1:1888396/72‑1 (MQ=255) aaCGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCta > 1:2766819/1‑72 (MQ=255) gTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCCATATAAACATCTataa > 2:8635563/1‑72 (MQ=255) gTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataa > 1:6688033/1‑72 (MQ=255) tttCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaa > 1:9127765/1‑72 (MQ=255) tttCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCNataaa > 2:3764056/1‑72 (MQ=255) tttCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAAACACCTCATGCAATATAAACATCTataaa > 2:4957793/1‑72 (MQ=255) ttCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaat > 1:6880362/1‑72 (MQ=255) tCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaata > 2:2248986/1‑72 (MQ=255) tCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTataaata > 1:1416714/1‑72 (MQ=255) tgtgGCTCGACGCATCTTCCTCATTCTTCTCTCCACANACCACCTCATGCAATATNNNCATCTAtaaataaa > 1:7023312/1‑72 (MQ=255) tgtgGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTAtaaataaa > 1:5503263/1‑72 (MQ=255) tgGCTCGGAGCACCTTCCCCATTCTTCTCTCCACAAACCCCCTCATGCACTATAAACATCTATAAATAAAGa > 2:5873744/1‑72 (MQ=255) tgGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGa > 1:7061380/1‑72 (MQ=255) tgGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGa > 1:8473281/1‑72 (MQ=255) ggCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGAt > 1:5037609/1‑72 (MQ=255) gCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATa > 1:6804834/1‑72 (MQ=255) cGACGCCTCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACa > 1:5846241/1‑72 (MQ=255) cGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACa > 2:5139569/1‑72 (MQ=255) gACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACaa > 2:1842437/1‑72 (MQ=255) gACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACaa > 1:8718528/1‑72 (MQ=255) aCGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAAt > 1:8288082/1‑72 (MQ=255) cGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATa > 2:2602729/1‑72 (MQ=255) gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAg > 2:2400033/1‑72 (MQ=255) cATCTTCCTCATTNTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGa > 1:3150775/1‑72 (MQ=255) aTCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGaa < 1:6269628/72‑1 (MQ=255) aTCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGaa > 2:349264/1‑72 (MQ=255) cTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAata > 1:9485341/1‑72 (MQ=255) ttCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAatat > 2:310257/1‑72 (MQ=255) tCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATAtt > 1:9110285/1‑72 (MQ=255) tCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATAtt > 1:8592822/1‑72 (MQ=255) tCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATAtt > 2:3280062/1‑72 (MQ=255) cTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTaa > 2:4748170/1‑72 (MQ=255) cATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAACTAAAGATAACAATAGAATNTTAAGc > 2:688410/1‑72 (MQ=255) | TGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC > NC_012967/4523707‑4523847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |