| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 1592280 | 90 (0.310) | 6 (0.020) | 6/134 | 18.2 | 8.0% | intergenic (‑17/‑259) | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase |
| ? | NC_012967 | = 1592499 | 54 (0.200) | intergenic (‑236/‑40) | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1592206‑1592280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcTTTTTCTGTATGCTCGTCAAATATAATAATTTTCAAACATATAAATCCGATTATTCTGAAA < NC_012967/1592499‑1592439 CTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAAT < 1:7551933/72‑1CTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAAT < 1:8573510/72‑1 TGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAATT < 1:8680361/72‑1 TGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAATT < 2:7548561/72‑1 GCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAATTG > 1:7827237/1‑72 CCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAATTGC < 2:2911069/72‑1 CCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAATTGC < 2:4686681/72‑1 AATTTCATACTGACTCCTTAATTGCTTTTTCTTTATTCTCGTCAAATATAATAATTTTCAAACATATAAATC > 2:6099109/1‑72 TTCATACTGACTCCTTAATTTCTTTTTCTGTATGCTCGTCAAATATAATAATTTTCAAACATATAAATACGA > 2:4367665/1‑72 TCATACTGACTCCTTAATTGCTTTTTCTGTATGCTCGTCAAATATAATAATTTTCAAACATATAAATCCGAT > 2:9078700/1‑72 GACTCCTTAATTGCTTTTTCTGTATGCTCGTCAAATATAATAATTTTCAAACATATAAATCCGATTATTCTG > 2:2775720/1‑72 ACTCCTTAATTGCTTTTTCTGTATGCTCGTCAAATATAATAATTTTCAAACATATAAATCCGAATATTCTGA > 2:3829476/1‑72 TCCTTAATTGCTTTTTCTGTATGCTCGTCAAATATAATAATTTTCAAACATATAAATCCGATTATTCTGAAA > 2:5622275/1‑72 CTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTGAAATTTCATACTGACTCCTTAATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1592206‑1592280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcTTTTTCTGTATGCTCGTCAAATATAATAATTTTCAAACATATAAATCCGATTATTCTGAAA < NC_012967/1592499‑1592439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |