| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 1592280 | 90 (0.310) | 6 (0.020) | 6/134 | 18.2 | 8.0% | intergenic (‑17/‑259) | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase |
| ? | NC_012967 | = 1592499 | 54 (0.200) | intergenic (‑236/‑40) | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTACAACT > NC_012967/1592435‑1592570 | atatTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATc < 1:9044597/72‑1 (MQ=255)atatTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATc > 2:6966469/1‑72 (MQ=255) ttttCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCAcc < 2:3809618/72‑1 (MQ=255) tttCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCt < 1:9311764/72‑1 (MQ=255) ttCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCtt < 2:8594999/72‑1 (MQ=255) tCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCttt < 1:1660298/72‑1 (MQ=255) gAATAATCGTATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACa < 2:1823115/72‑1 (MQ=255) ataatCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACata < 2:2917714/72‑1 (MQ=255) aatCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACAtata > 1:1385879/1‑72 (MQ=255) aTTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCg < 1:4408921/72‑1 (MQ=255) tataTGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTgg < 1:7961593/72‑1 (MQ=255) gTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACaaa < 2:1957300/72‑1 (MQ=255) tttGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACaaaa < 1:1526126/72‑1 (MQ=255) ttGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACaaaaa < 2:2779071/72‑1 (MQ=255) tGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACaaaaaa > 1:9937858/1‑72 (MQ=255) tGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACaaaaaa > 1:4869978/1‑72 (MQ=255) aaTTATTATATTTGACTAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGt < 2:1789588/72‑1 (MQ=255) attattATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTg > 2:9207597/1‑72 (MQ=255) attattATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCATGGACAAAAAACAGTg < 1:506758/72‑1 (MQ=255) atatTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACAtt < 1:7329921/72‑1 (MQ=255) atatTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACAtt > 1:2585408/1‑72 (MQ=255) atTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTaa > 2:3998284/1‑72 (MQ=255) atTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTaa > 1:4321569/1‑72 (MQ=255) atTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTaa > 1:2707994/1‑72 (MQ=255) tttGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAAt > 1:4913729/1‑72 (MQ=255) tGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATag > 1:6769068/1‑72 (MQ=255) tGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATag > 1:4501017/1‑72 (MQ=255) gACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATaga > 2:777443/1‑72 (MQ=255) gACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATaga < 2:1208928/72‑1 (MQ=255) gACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATaga > 1:2448217/1‑72 (MQ=255) aCGAGCATACAGAAAAAGCAAATCACCTTTATATATAAAAGCGTGGACAAAAAACAGTGAACATTAATagag > 2:6128874/1‑72 (MQ=255) aCGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATagat > 1:1173136/1‑71 (MQ=255) aCGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATagag > 2:8637362/1‑72 (MQ=255) aCGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATagag > 2:7955916/1‑72 (MQ=255) cGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAgaga > 2:5250460/1‑72 (MQ=255) cGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAgaga > 2:5915439/1‑72 (MQ=255) gAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGAt > 1:2903057/1‑72 (MQ=255) gAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGAt > 2:5727989/1‑72 (MQ=255) gCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATaa > 1:3044928/1‑72 (MQ=255) gCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATaa > 1:7680841/1‑72 (MQ=255) cATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAATCTTAATAGAGATaaa > 2:2750660/1‑72 (MQ=255) cATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATaaa > 2:4946646/1‑72 (MQ=255) tACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAAt > 2:9913152/1‑72 (MQ=255) tACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAAt > 1:9086861/1‑72 (MQ=255) aCAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAAtt > 1:9333131/1‑72 (MQ=255) aGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGt > 1:5413165/1‑72 (MQ=255) gAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTa > 2:5284670/1‑72 (MQ=255) aaaaaGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTAc > 2:2787006/1‑72 (MQ=255) aaaGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTActa > 2:1384349/1‑70 (MQ=255) aaaGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTACaa > 2:2317493/1‑72 (MQ=255) aaGCAAATCACCTTTACATATAAAAGCGTNGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTACAAc > 2:837205/1‑72 (MQ=255) aaGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTACAAc > 1:413042/1‑72 (MQ=255) aaGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTCTACAAc > 2:708840/1‑72 (MQ=255) aGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTACAACt < 1:7834703/72‑1 (MQ=255) | ATATTTTCAGAATAATCGGATTTATATGTTTGAAAATTATTATATTTGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAGTGAACATTAATAGAGATAAAATTGTACAACT > NC_012967/1592435‑1592570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |