| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 156 (0.540) | 39 (0.170) | 29/114 | 8.2 | 21.4% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 161 (0.700) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 212 total aligned reads displayed.
CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCA‑CAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 | ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc < 1:1668820/72‑1 (MQ=255)ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc < 2:8705540/72‑1 (MQ=255)ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc > 1:6977930/1‑72 (MQ=255)ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc > 1:4798057/1‑72 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 2:212729/72‑1 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 2:1360856/72‑1 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac > 2:4660910/1‑72 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac > 2:5274241/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 2:5930724/72‑1 (MQ=255) aTTTTGACGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa < 2:8842520/72‑1 (MQ=255) ttttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaa > 2:7133727/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 2:7206222/72‑1 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 1:8583192/72‑1 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa > 1:3641167/1‑72 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa > 1:1461338/1‑72 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa > 1:5830663/1‑72 (MQ=255) gNCGCCATCGTTAAAAAACAGTGCTTCNAACATCATGATTTTAAAGAGCATAAATTTCAGACAACAAAAAAc < 1:971656/72‑1 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAcc < 2:7522127/72‑1 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAccc > 2:5427283/1‑72 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa < 2:2819011/72‑1 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa > 1:8523890/1‑72 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCAt < 1:3115104/72‑1 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCAt < 1:3102362/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAACACCCAtt > 2:5266214/1‑71 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATc < 1:9060241/72‑1 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACACAttt > 1:708755/1‑70 (MQ=255) tCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCaa > 1:4864044/1‑72 (MQ=255) tCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCaa > 2:6765547/1‑72 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGATCATAAATTTCAGGCAACAAAAAACCCATCAAc > 1:1949028/1‑72 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAAc < 1:2325852/72‑1 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAAcc < 2:4370141/72‑1 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAAcc < 1:6766975/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCt < 2:6132149/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCt < 2:4935046/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCt > 1:4758203/1‑72 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAAc < 2:8451343/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAAc < 2:1029630/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAAc > 1:9686745/1‑72 (MQ=255) aaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAAcc < 2:6924969/72‑1 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCg < 2:8148926/72‑1 (MQ=255) aCAGTGCTTCTAACATCANGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCg < 1:3811658/72‑1 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGaa < 2:4710721/72‑1 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGaa < 1:5191063/72‑1 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAAACTTGAACCGaa > 1:2048920/1‑72 (MQ=255) gTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGAAACAAAAAACCCATCAACCTTGAACCGaaa < 1:6125033/72‑1 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAAt < 2:5333824/72‑1 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAAt < 2:97123/72‑1 (MQ=255) gCTTCTGACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGCAATg > 1:7597209/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCCTCAAACTTGAACCGAAATg > 1:4140744/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATg < 1:5915943/72‑1 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATg < 2:3967059/72‑1 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATg < 2:8096663/72‑1 (MQ=255) cTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATgg < 1:8364339/72‑1 (MQ=255) ttCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGc < 1:1330442/72‑1 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCCCCCACCCTTAACCCAAAAAGCgg > 1:3751421/1‑72 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCgg < 2:285988/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCTGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCggg < 1:104411/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCggg < 2:3067394/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATGTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCggg < 2:6835942/72‑1 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGt < 2:6490977/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCCACCTTTAACCGAAATGGCgggggg > 1:5614624/1‑70 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCgggggt > 1:9102740/1‑70 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGtt < 1:2089079/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGtt > 2:7572563/1‑72 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTg > 2:4196135/1‑72 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGa < 2:8834436/72‑1 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGa > 2:8018444/1‑72 (MQ=255) catGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTTAACCGAAATGGCGGGGGTggg > 2:241542/1‑70 (MQ=255) catGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGAt > 1:5066501/1‑72 (MQ=255) atGATTTTTTAGAGCATAAATTTCAGGCAACAAAAAACCACTCAACCTTGAACCGAAATGGCGGGGGGGATg > 2:9105724/1‑72 (MQ=255) atGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATg < 2:2054147/72‑1 (MQ=255) atGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATg < 1:2699562/72‑1 (MQ=255) tGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATgg < 1:8217466/72‑1 (MQ=255) gATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATggg < 2:9638662/72‑1 (MQ=255) gATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATggg > 1:5198259/1‑72 (MQ=255) gATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATAAACCTTGAACCGAAATGGCGGGGTTGATggg < 1:7696719/72‑1 (MQ=255) aTTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGc < 1:6626101/72‑1 (MQ=255) aTTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGc < 2:1318083/72‑1 (MQ=255) aTTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGc < 1:9770877/72‑1 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCt < 2:5500895/72‑1 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTc < 2:6709469/72‑1 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTc < 1:4091152/72‑1 (MQ=255) ttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTcc > 2:7512910/1‑72 (MQ=255) aaaGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGGTGGGNGcccc > 2:3752157/1‑70 (MQ=255) aaGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGTGCTCca‑ca < 2:4994967/72‑1 (MQ=255) gagCATAAATTGCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCA‑Caaa < 1:7312229/72‑1 (MQ=255) gaaTAAATTTAAGCCAAAAAAAAACCCTCCACCCTGGAACCGAAATGGCGGGTTTGATGGGCTCCA‑CAAAAt < 1:8936852/70‑1 (MQ=255) cATAAATTTCAGGCAACAAAAAACCCATCAAACTTGAAACGAAATGGCGGGGGTGTGGGGGTCCC‑Ccaaaaa > 2:6049782/1‑70 (MQ=255) aTAAATTTCAGGCAACAAAAAACCCCTCAACATTGAACCGAAATGGCGGGGTTGCTGGGGTTCT‑CAAAAAgg > 1:4462833/1‑72 (MQ=255) tAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCA‑CAAAATggg < 2:7406601/72‑1 (MQ=255) aTTTCAGGCAACAAAAAACCCACCAACCTTGAACCGAAATGGCGGGGGTGCAGGGCTGCA‑CAACAAGGGGAc > 1:9562178/1‑72 (MQ=255) tttCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGATACA‑CAAAATGCGGACa > 2:7306670/1‑72 (MQ=255) ttccAGGCAACAAAAAACCCATCAACCTGGAACCGAAATGGCGGGGTTGATGGGCTCCA‑CAAAATGGGGACa < 1:9358133/69‑1 (MQ=255) tCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCA‑CAAAATGGGGACATc > 1:2434824/1‑72 (MQ=255) tCAGCCAACAAAAAACCCATCACCCGTGAACCGAAATGGCGGGGTTGATGGGCTCCA‑CAAAATGGGGACATc < 2:9234216/72‑1 (MQ=255) cAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCC‑CAAAATGGGGGCATCa > 1:7935526/1‑72 (MQ=255) aGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGGTTCA‑CAAAATGGGGGCATCaa > 1:7399855/1‑72 (MQ=255) caacaaAAAACCCCTCAAACCTGAACCGAAATGGCGGGGGGGGTGGGGTGCACCAAAATGGGG‑CATCAAAGa > 2:1837389/1‑72 (MQ=255) caacaaAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCC‑CAAAATGGGGGCATCaaaag > 2:4591253/1‑70 (MQ=255) caacaaAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCA‑CAAAATGGGGACATCAAAGa > 2:7942396/1‑72 (MQ=255) | CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCA‑CAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |