| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 248715 = | 251 (0.990) | 8 (0.050) | 3/100 | 14.4 | 7.1% | intergenic (+23/‑183) | lpcA/yafJ | D‑sedoheptulose 7‑phosphate isomerase/class II glutamine amidotransferase |
| ? | NC_012967 | = 480764 | 33 (0.190) | intergenic (+138/+279) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 158 total aligned reads displayed.
GCCTACGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/248806‑248715‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccggatgcggcgtaaacgCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGCAAT < NC_012967/480764‑480694 GCCTACGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGAACAAA > 1:6865013/1‑72 CCTACGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAAT > 1:7073903/1‑72 TACGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGC > 2:1609234/1‑72 ACGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCC > 1:5209541/1‑72 ACGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCC < 2:8354260/72‑1 CGGTTCGCGTACAGATTTGTAGGCATGATNAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAAAGCCG > 2:793605/1‑72 CGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCG < 2:6952088/72‑1 gtTTCGCGAACAATTTTGTAGGCATGATAAGACGCGTCAGCTTCGCATCAGGCATCAGCGCACAAATGCCGG < 2:8186418/70‑1 GGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGG > 1:5081488/1‑72 GGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGG > 2:8564234/1‑72 GGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGG > 2:5275216/1‑72 GTTCGCTTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGA < 2:6206102/72‑1 GTTCGCGTACAGANTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGGCGGA > 1:2934758/1‑72 TTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGAT < 2:7563634/72‑1 TTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCCGAT > 1:2153500/1‑72 TCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATG > 2:4393408/1‑72 gGCGTACAGGTTGGGAGGCATGATAAGCCGCGTCAGCGTCGCATCAGGCATCAGCGCACAAAGGCCGGATGC < 1:45609/71‑1 CGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGC < 2:2347980/72‑1 CGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGC > 2:8896964/1‑72 CGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGC < 1:7056324/72‑1 GCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCG > 2:8754990/1‑72 GCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCG > 2:2905328/1‑72 GCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCG > 2:1757376/1‑72 GCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCG < 1:4722610/72‑1 CGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGG > 2:5036984/1‑72 CGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGG > 1:3768604/1‑72 CGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGG > 2:4511778/1‑72 CGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGAAGCGG > 1:574145/1‑72 GTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGC > 1:9126533/1‑72 TACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCG > 2:7607006/1‑72 TACAGATTTGAGGGAATGAAAAGGCGCGTCGGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCG < 1:963461/72‑1 ACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGT < 2:6314965/72‑1 ACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGT > 1:7613034/1‑72 CAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTA > 2:7850334/1‑72 CAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTA > 1:7610708/1‑72 AGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAA < 2:6733790/72‑1 AGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAA < 1:273609/72‑1 ATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTANAC > 2:752721/1‑72 ATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAAC < 1:6225542/72‑1 TAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGGCTT > 1:8311626/1‑72 GCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGGAAACGGCTTATC > 2:1064868/1‑72 ATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACACATGCCGGAAGCGGGGTAAAAGGCATATCCa > 2:7836068/1‑71 ATAAGACGCGTCAGCGTCGCATCAGGAATCAGCGCACAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCC > 1:1834382/1‑72 GACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGAAGCGGCGTAAACGGCTTATCCGGCCTACG > 2:697416/1‑72 ATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCCCAAGTTTGTAGGCCTGGTAACACGGG > 2:7402988/1‑72 TGCGGGAGGCGCCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGT < 1:4172967/72‑1 TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGT < 1:7257580/72‑1 TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGT < 2:8671871/72‑1 GCCGGGTGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTA < 1:3330414/72‑1 GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAA < 1:7479104/47‑1 CCGGATGCGGCGTAAACTCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAA < 2:3694697/72‑1 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAG > 2:9149672/1‑40 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAG < 1:9149675/40‑1 CGGTTGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAG < 1:7991196/72‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAGGTTTGTAGGCCTGATAAGACGGGTAAG > 2:6796231/1‑72 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAGGTTTGTAGGCCTGCTAAGACGGGTAAGC > 1:411806/1‑72 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGNCANATAAGACGGGTCAGC > 2:6542034/1‑72 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGC < 2:2705334/72‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGC < 1:1420627/72‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGC < 2:4260192/72‑1 GGATGCGGCGTAAACGCCTTATCCCGCCTACGGTTCAGGCACAGGGTTGTAGGCCTGGTAAAACGGGTAAGC > 2:7410680/1‑72 GATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCG > 1:3756095/1‑72 GATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTACGCCTGATAAGACGGGTAAGCG > 1:3832908/1‑72 GATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGG < 2:6154868/38‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGG > 1:6154871/1‑38 GATGCGGCATAAACGCCTTTTCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCG < 2:2205097/72‑1 ATGCGGCGTAAACTCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGT < 2:130089/72‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGT > 1:2225452/1‑72 ATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGT > 1:8699152/1‑72 ATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTA < 2:1060665/49‑1 TGCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTC < 1:7841741/72‑1 TGCGGCCTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTC < 1:4377146/72‑1 GCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCA > 1:5021703/1‑37 GCGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCA < 2:5021701/37‑1 CGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCAC < 2:3742681/72‑1 CGGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCAC < 1:433055/72‑1 CGGCGTAAACGCCTNNNCCGGCCTACGGTTCAGGNACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCAC < 1:6535800/72‑1 GGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACA > 1:1341352/1‑72 GGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACA > 1:6515539/1‑72 GGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACA > 2:4752482/1‑72 GGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCAC < 1:7903628/36‑1 GGCGTAAACGCCTTATCCGGCCTACGGTTCAGGCAC > 2:7903625/1‑36 GTAAACGCCTTATCCGGCCTACGGTTCAGGCACAGGTTTGTAGGCCTGATAAGACGGGTAAGCGTCA > 1:48371/1‑67 GTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCA < 2:7205834/72‑1 GTAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCA < 2:48371/67‑1 TAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAG < 2:1413336/72‑1 TAAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAG < 2:6463378/72‑1 AAACGCCTTATCCGGCTTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGG < 1:2903114/72‑1 AAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGG > 1:4276818/1‑72 AAACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGG > 2:8999744/1‑72 AACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGC < 1:4826611/72‑1 AACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGC > 1:7230984/1‑72 AACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGC > 1:1282662/1‑72 AACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGC < 2:5228539/72‑1 AACGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTG < 1:360327/37‑1 AACGCCTTATCCGGCATACGGTTCAGGCACAAGTTTGTA < 1:8514982/39‑1 CGCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACCGGTAAGCGTCACATCAGGCAA > 2:5003133/1‑72 GCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGCAAT > 1:5707585/1‑72 GCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGCAAT > 1:8178977/1‑72 GCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGCAAT > 2:1974168/1‑72 GCCTACGGTTCGCGTACAGATTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/248806‑248715‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccggatgcggcgtaaacgCCTTATCCGGCCTACGGTTCAGGCACAAGTTTGTAGGCCTGATAAGACGGGTAAGCGTCACATCAGGCAAT < NC_012967/480764‑480694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |