| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 248715 = | 251 (0.990) | 8 (0.050) | 3/100 | 14.4 | 7.1% | intergenic (+23/‑183) | lpcA/yafJ | D‑sedoheptulose 7‑phosphate isomerase/class II glutamine amidotransferase |
| ? | NC_012967 | = 480764 | 33 (0.190) | intergenic (+138/+279) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 260 total aligned reads displayed.
AGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAA > NC_012967/248644‑248785 | aGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGAc > 1:2437715/1‑72 (MQ=255) gTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACg < 1:5161555/72‑1 (MQ=255) gTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACg > 1:7440928/1‑72 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt > 2:9169687/1‑72 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt > 1:3867281/1‑72 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt < 2:5303346/72‑1 (MQ=255) gATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTANGTCTGGCGTAGGCCGGATAANACGtt > 2:1006255/1‑72 (MQ=255) gATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGtt < 1:6034047/72‑1 (MQ=255) aTCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGttt > 2:6396434/1‑72 (MQ=255) aTCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGttt > 1:4559051/1‑72 (MQ=255) tCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTa < 1:4874250/72‑1 (MQ=255) ccATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAc > 2:3913982/1‑72 (MQ=255) cATATCCTGATCCAGTTGATTGNAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcg < 1:4072817/72‑1 (MQ=255) cATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcg > 1:7675228/1‑72 (MQ=255) cATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcg < 1:7477109/72‑1 (MQ=255) atatCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgc < 1:6461662/72‑1 (MQ=255) atatCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgc < 1:5541602/72‑1 (MQ=255) atatCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgc < 2:8609012/72‑1 (MQ=255) tatCCTGATCCAGTTGATTGAAAAAGAGATGGTTACGTCAGTCTGGCGTAGGCCGGAGAAGAGGGTTAcgcc > 2:2781608/1‑72 (MQ=255) atCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgccg > 1:3246369/1‑72 (MQ=255) tCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgcgcg > 1:2838395/1‑69 (MQ=255) tCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgccgc < 1:6387812/72‑1 (MQ=255) ccTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCa < 1:1911798/72‑1 (MQ=255) cTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCAt > 2:5238479/1‑72 (MQ=255) tGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTTCGCCGCATc > 1:1190773/1‑72 (MQ=255) gATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATcc < 2:2423708/72‑1 (MQ=255) gATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATcc < 1:7546833/72‑1 (MQ=255) tCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCgg < 2:6039548/72‑1 (MQ=255) cAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCa > 2:232980/1‑72 (MQ=255) aGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTNNNGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAt > 1:1606190/1‑72 (MQ=255) aGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAt > 1:2214985/1‑72 (MQ=255) gTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAtt < 1:2877473/72‑1 (MQ=255) ttgattgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAttt < 1:4285594/72‑1 (MQ=255) gattgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTtgt < 2:3854982/72‑1 (MQ=255) attgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTtgtg > 1:9035267/1‑72 (MQ=255) attgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTtgtg < 2:1473796/72‑1 (MQ=255) ttgaAAAAGGGATGGTTAGGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgc < 2:2123628/72‑1 (MQ=255) ttgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgc > 1:8044829/1‑72 (MQ=255) ttgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgc < 1:5870145/72‑1 (MQ=255) tgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTtgtggg > 1:4179392/1‑70 (MQ=255) tgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg > 1:6903053/1‑72 (MQ=255) gaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcgc > 1:2743716/1‑72 (MQ=255) aaaaGAGATGGTAAAGTAAGTCTGGCGTGGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctg < 2:3669650/72‑1 (MQ=255) aaGAGATGGTTAAGTAAGTCTGGNGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat > 1:5893121/1‑72 (MQ=255) aaGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat < 2:7693791/72‑1 (MQ=255) aaGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat < 1:8770387/72‑1 (MQ=255) aaGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat < 1:2597156/72‑1 (MQ=255) agagATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatg > 1:5272024/1‑72 (MQ=255) agaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcc < 2:8356525/72‑1 (MQ=255) agaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCCGGCTTTGTGCGctgatgcc > 2:5031918/1‑72 (MQ=37) gaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct < 2:2483394/72‑1 (MQ=255) tGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctga < 1:3596553/72‑1 (MQ=255) nngTTAAGTAAGTCTGGCGTGGGCCGGATAAGACGTTNNNGCCGCATCCGGCATTTGTGCGctgatgcctga < 1:5671102/70‑1 (MQ=25) ggTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgat > 2:8414456/1‑72 (MQ=255) ttAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc > 1:7971602/1‑72 (MQ=255) ttAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc < 1:23931/72‑1 (MQ=255) ttAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc < 1:9138667/72‑1 (MQ=255) ttAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc > 1:3751090/1‑72 (MQ=255) ttAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcccgatgc > 1:7081527/1‑72 (MQ=255) taagtaagTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCg < 2:8851289/72‑1 (MQ=255) aagtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa < 2:6438095/72‑1 (MQ=255) aagtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa > 2:6707556/1‑72 (MQ=255) agtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGag > 1:594482/1‑71 (MQ=255) agtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc < 1:7207258/72‑1 (MQ=255) agtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 2:8549050/1‑72 (MQ=255) gtaagtCGGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACg < 2:701614/72‑1 (MQ=255) gaaagtCGGACGTGGCCGGGATAAAACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACg < 2:543496/70‑1 (MQ=17) aagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt < 2:7824979/72‑1 (MQ=255) aagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt > 1:6756614/1‑72 (MQ=255) agtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTg < 2:1676727/72‑1 (MQ=255) agtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTg < 2:5122852/72‑1 (MQ=255) cTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg < 1:4759706/72‑1 (MQ=255) tGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc < 2:7326012/72‑1 (MQ=255) tGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCCTAcgc > 2:4935450/1‑72 (MQ=255) ggCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 1:1809961/72‑1 (MQ=255) ggCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 1:381131/72‑1 (MQ=255) ggCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACCCTGAcgcg > 1:853797/1‑72 (MQ=255) agCGTAGGCCGGATAAGACGTTTACGCCGCATCCTGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 2:3390793/71‑1 (MQ=255) gCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGt > 2:4736232/1‑72 (MQ=255) gTAGGCCGGATAAGACGTTTACGCCGGATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt < 2:6922560/72‑1 (MQ=255) gTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt < 2:6603492/72‑1 (MQ=255) gTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt < 1:8301211/72‑1 (MQ=255) tAGGCCGGATAAGACGTTTAGGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt < 2:1916390/72‑1 (MQ=255) tAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt < 2:2841281/72‑1 (MQ=255) aGGCCGGATAGGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTa < 1:50516/72‑1 (MQ=255) aGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCntc > 2:752567/1‑71 (MQ=255) aGGCCGAATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTa < 1:6096873/72‑1 (MQ=255) ggATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGTCGCTGACGCGTCGTATCATg > 1:8867416/1‑72 (MQ=255) ggATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATg > 2:4526895/1‑72 (MQ=255) ggATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCCTATCATg > 1:2161055/1‑72 (MQ=255) ggATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACCCGTCTTATCATg > 2:8213725/1‑72 (MQ=255) gATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGc > 2:7050058/1‑72 (MQ=255) gATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGc > 2:7900577/1‑72 (MQ=255) aTAAGNCTTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGcc < 2:3508350/72‑1 (MQ=255) tAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCt < 1:8438074/72‑1 (MQ=255) aaGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTa > 2:8818104/1‑72 (MQ=255) agccGTTTCCCCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTAc < 2:5697415/69‑1 (MQ=17) aGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTAc < 2:4302670/72‑1 (MQ=255) aGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTAc > 1:1420593/1‑72 (MQ=255) gACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACa < 1:2291991/72‑1 (MQ=255) | AGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAA > NC_012967/248644‑248785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |