New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 248715 =251 (0.990)8 (0.050) 3/100 14.4 7.1% intergenic (+23/‑183) lpcA/yafJ D‑sedoheptulose 7‑phosphate isomerase/class II glutamine amidotransferase
?NC_012967 = 480764 33 (0.190)intergenic (+138/+279) ybaQ/copA HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 112 total aligned reads displayed.

CATTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGA  >  NC_012967/480693‑480808
                                                                       |                                            
cATTGCATGTTGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAgg                                              <  2:649674/72‑1 (MQ=255)
 aTTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGc                                             >  2:5707582/1‑72 (MQ=255)
 aTTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGc                                             <  1:8178977/72‑1 (MQ=255)
 aTTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGc                                             <  2:1974168/72‑1 (MQ=255)
 aTTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGc                                             <  1:7795972/72‑1 (MQ=255)
 aTTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGc                                             <  1:5707585/72‑1 (MQ=255)
 aTTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGc                                             >  2:7887803/1‑72 (MQ=255)
   tGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGt                                           >  1:7909512/1‑72 (MQ=255)
    gCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGtt                                          <  1:1282662/72‑1 (MQ=255)
    gCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGtt                                          >  1:4826611/1‑72 (MQ=255)
    gCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGtt                                          >  1:4909599/1‑72 (MQ=255)
    gCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGtt                                          >  2:5228539/1‑72 (MQ=255)
    gCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGtt                                          <  1:7230984/72‑1 (MQ=255)
     ccTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGttt                                         <  2:8999744/72‑1 (MQ=255)
     ccTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGttt                                         <  2:5008044/72‑1 (MQ=255)
     ccTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGttt                                         >  1:7145290/1‑72 (MQ=255)
     ccTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGttt                                         <  1:4276818/72‑1 (MQ=255)
      cTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTa                                        >  2:6463378/1‑72 (MQ=255)
       tGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGGNGTTAc                                       >  2:412585/1‑72 (MQ=255)
       tGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAc                                       >  2:7205834/1‑72 (MQ=255)
       tGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAAAAGGCGTTTAc                                       >  1:3814751/1‑72 (MQ=255)
         aTGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgc                                     >  1:7495733/1‑72 (MQ=255)
         aTGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgc                                     <  2:6664315/72‑1 (MQ=255)
          tgtgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgcc                                    <  1:6515539/72‑1 (MQ=255)
          tgtgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgcc                                    <  2:4752482/72‑1 (MQ=255)
          tgtgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgcc                                    <  1:1341352/72‑1 (MQ=255)
          tgtgACGCTCACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgcc                                    <  1:9215528/72‑1 (MQ=255)
          tgagACGCTAACCCGTCTTACCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgcc                                    <  2:538998/69‑1 (MQ=14)
           gtgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccg                                   >  1:433055/1‑72 (MQ=255)
           gtgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccg                                   >  2:3742681/1‑72 (MQ=255)
           gtgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccg                                   >  2:7052091/1‑72 (MQ=255)
            tgccGCTTCCCCGTTTTCTCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccgc                                  <  1:3163062/69‑1 (MQ=14)
            tgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccgc                                  <  2:8650927/72‑1 (MQ=255)
            tgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccgc                                  <  1:8485337/72‑1 (MQ=40)
            tgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccgc                                  <  1:3979618/72‑1 (MQ=40)
            tgACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAc                                       >  2:48371/1‑67 (MQ=255)
            tgACGCTTACCCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAc                                       <  1:48371/67‑1 (MQ=14)
            taaCGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccgc                                  <  1:3617798/70‑1 (MQ=255)
             gACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAGGCCgca                                 >  1:4377146/1‑72 (MQ=255)
             gACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca                                 >  2:7331960/1‑72 (MQ=40)
             gACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca                                 >  1:7841741/1‑72 (MQ=39)
              aCGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcat                                >  2:4701946/1‑72 (MQ=40)
              aCGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcat                                <  1:2225452/72‑1 (MQ=39)
              aCGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcat                                <  1:8699152/72‑1 (MQ=39)
              aCGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGAGTTTACGCCgcat                                >  2:130089/1‑72 (MQ=255)
               cGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatc                               <  1:3756095/72‑1 (MQ=39)
               cGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatc                               <  1:4254770/72‑1 (MQ=39)
               cGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAAAAGGCGTTTATGCCgcatc                               >  2:2205097/1‑72 (MQ=255)
                gCTTACCCGTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc                              <  1:3279644/72‑1 (MQ=255)
                gCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCTGATAAGGCGTTTACGCCgcatcc                              <  1:5379261/72‑1 (MQ=255)
                gCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc                              <  1:6666400/72‑1 (MQ=39)
                gCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc                              >  2:4260192/1‑72 (MQ=255)
                gCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc                              >  1:1420627/1‑72 (MQ=255)
                gCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc                              >  2:2705334/1‑72 (MQ=40)
                gCTGACCTGTCTTATCGGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc                              <  2:3917982/72‑1 (MQ=11)
                gCTGACCCGTCTTATNTGNCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc                              <  2:6542034/72‑1 (MQ=14)
                 cTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcaaccg                             >  1:7991196/1‑72 (MQ=255)
                  ttACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccgg                            >  1:2803683/1‑72 (MQ=39)
                  ttACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGAGTTTACGCCgcatccgg                            >  2:3694697/1‑72 (MQ=255)
                   tACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcacccggc                           >  1:3330414/1‑72 (MQ=255)
                    aCCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGGCgcctcccgca                          >  1:4172967/1‑72 (MQ=14)
                    aCCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggca                          >  1:7257580/1‑72 (MQ=39)
                    aCCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggca                          >  2:4943986/1‑72 (MQ=39)
                    aCCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggca                          >  2:8671871/1‑72 (MQ=40)
                     cccGTGTTACCAGGCCTACAAACTTGGGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcat                         <  2:7402988/72‑1 (MQ=11)
                      ccGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcncgcatc                        >  2:625982/1‑72 (MQ=255)
                        gttttACCAGGCCTACAAACTGGTGCCTGAACCGTAGGCGGGATAGGGCGTTGACGCCgcatcgggcatccg                      <  2:7552678/69‑1 (MQ=11)
                        gTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatccg                      >  2:270348/1‑72 (MQ=35)
                         tgttACCAGGCCTACAAACTTGTGCCTGAACCGTGGGCCGGATAAGGCGTTTACGCCGCATCGGGCATCCGa                     <  2:6712299/70‑1 (MQ=11)
                            tATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCCTCCCGCACCCGAGcc                  >  1:543891/1‑71 (MQ=11)
                              tCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCAcc                <  1:6696938/72‑1 (MQ=34)
                              tCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCAcc                <  1:6481690/72‑1 (MQ=34)
                               cAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCa               <  1:8807447/72‑1 (MQ=34)
                               cAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCa               <  1:8866439/72‑1 (MQ=34)
                                aGGCCTACAAACTTGTGCCTGAACCGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCAt              >  1:2039501/1‑72 (MQ=25)
                                 ggCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGGATCCGGCATGCGAGTACCagt             >  2:6157761/1‑70 (MQ=11)
                                 ggCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCAtt             <  1:7197295/72‑1 (MQ=34)
                                 ggCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCAtt             <  1:8665385/72‑1 (MQ=34)
                                 ggCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCAtt             >  2:8704696/1‑72 (MQ=35)
                                  gCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCCTTg            >  1:3666977/1‑72 (MQ=21)
                                  gCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTg            <  1:7005946/72‑1 (MQ=34)
                                   ccTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCCGGCACCAtttc           >  2:141660/1‑70 (MQ=11)
                                     tACAAACTTGTGCCTGAACCGTATGCCGGATAAGGCGtt                                          >  1:8514982/1‑39 (MQ=255)
                                     tACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcat                                >  2:1060665/1‑49 (MQ=40)
                                     tACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCt         <  2:9062111/72‑1 (MQ=34)
                                     tACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCt         >  2:8961309/1‑72 (MQ=35)
                                     tACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCt         >  2:8331308/1‑72 (MQ=34)
                                     aaaaaaCTTGTGCCTGAACCGTAGGCCGGAAAAGCCGTTAACGCCGCACCGGGCATCCGAGCACCATTGCCt         <  1:1697802/69‑1 (MQ=11)
                                      aCAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCCTTGcccg        >  1:1269546/1‑70 (MQ=255)
                                      aCAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTg        <  2:4510640/72‑1 (MQ=34)
                                       cAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGtt                                          >  1:360327/1‑37 (MQ=255)
                                        aaaCTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTTCCGGaa      >  1:1735280/1‑71 (MQ=255)
                                        aaaCTTGGGCATGACCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGAt      <  1:4136413/72‑1 (MQ=11)
                                        aaaCTGGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGAt      <  1:7177227/72‑1 (MQ=21)
                                         aaCTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATg     <  1:403291/72‑1 (MQ=34)
                                          aCTTGTGCCTGACCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGc    <  1:6160251/72‑1 (MQ=21)
                                            ttGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccgc                                  >  2:2175414/1‑40 (MQ=33)
                                            ttGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggc                           <  2:7479101/47‑1 (MQ=32)
                                            ttGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggc                           >  1:7479104/1‑47 (MQ=32)
                                            ttGTGCCTGAAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGa  <  1:7538747/72‑1 (MQ=14)
                                                                       |                                            
CATTGCCTGATGTGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGA  >  NC_012967/480693‑480808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.