| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 188 (0.740) | 17 (0.080) | 17/114 | 9.1 | 12.5% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 87 (0.430) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 108 total aligned reads displayed.
CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/880612‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < NC_012967/904682‑904612 CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA > 2:9174252/1‑72CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA > 1:6207572/1‑72 CACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 2:826208/72‑1 CACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT > 2:2201644/1‑72 CACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 1:2908881/72‑1 ACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATG < 1:7601213/72‑1 ACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATG < 1:7349899/72‑1 ACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATG < 1:321441/72‑1 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG < 1:639240/72‑1 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG > 1:3212030/1‑72 CACTGACCACCAAGCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG > 1:2917928/1‑72 CACTGACCACCAACCCAACTTATTGTTTTTACTTTAACTTATTGTTTTCATTAACCCGTTTACATACATGGG > 2:267787/1‑72 CACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG < 1:8335975/72‑1 CACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG < 1:269586/72‑1 CACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTATTTTCATTAACCCGTTTACATAAATGGG < 1:4121877/72‑1 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGT > 1:2544797/1‑72 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGT > 2:8806610/1‑72 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGT > 1:2247997/1‑72 ACTGACCACCAACCCAACTTATTGTTTTTACTATAAATTATTGTTTTCATTAACCCGTTTACATAAATGGGT > 1:5822073/1‑72 CTGACCACCAACCCAACTTATTGTTTTTACTGTAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTT < 1:289198/72‑1 CTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTT < 1:3769893/72‑1 CTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTT > 2:7756681/1‑72 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT < 2:168779/72‑1 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT > 2:3071386/1‑72 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT > 2:1053556/1‑72 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT > 2:527833/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTCCATAAATGGGTTTT > 1:6561644/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 2:7373267/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 1:7757388/1‑72 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT < 1:5162409/72‑1 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT < 1:5435293/72‑1 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT < 1:6746522/72‑1 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT > 1:5681645/1‑72 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT < 1:5722451/72‑1 ACCACCAACCCAACTTATTGTTNTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT < 1:4058636/72‑1 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT < 2:1152019/72‑1 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT < 1:8549714/72‑1 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT < 2:8775924/72‑1 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT > 2:6209945/1‑72 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT < 1:2404506/72‑1 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG < 1:2316356/72‑1 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT > 2:5806332/1‑72 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT < 1:5403471/72‑1 ACCAACCCAACTTATGGTTTTTACTATAACTTATTGTTTTCANTAACCCGTTTACATAAATGGGTTTTTTGT < 2:460430/72‑1 CCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT < 2:5498000/72‑1 CCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT > 1:7940820/1‑72 CAACCTAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTG > 2:4861947/1‑72 CCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTG > 2:8255661/1‑72 TTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATT > 1:1552095/1‑72 TTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCT < 1:1502466/72‑1 ACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTCTCTGAAATTTATGCTCTTTA > 2:4368105/1‑72 TATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAA > 1:5417736/1‑72 CTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCAT > 2:5281440/1‑72 TTNTTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAANTTATGCTCTTTAAAATCATG > 2:836128/1‑72 TTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATG > 1:423925/1‑72 TCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAA > 2:6503812/1‑72 CATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAG > 1:554321/1‑72 TTAACCCGTTTACATAAANGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCA < 1:3551679/72‑1 TAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCAC > 2:2450002/1‑72 ACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTG < 1:1235512/72‑1 CCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTT > 2:3314721/1‑72 AATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATG > 2:1865425/1‑72 agGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGG < 1:3043711/70‑1 agGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGG < 2:2885009/70‑1 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAAGGATGG > 2:2084551/1‑72 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGG < 2:244791/72‑1 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGG < 1:3767976/72‑1 TGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGC < 1:7245637/72‑1 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGA > 2:8516399/1‑72 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGA < 1:2123868/72‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC < 1:2978057/72‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC > 2:4942311/1‑72 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC > 2:3744550/1‑72 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC > 1:2097597/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA < 1:793853/72‑1 TTTTTTGTTGCCTGAAATTTATGCTCTTNAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA > 2:3368349/1‑72 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 2:3096369/1‑72 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 1:5240683/72‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 1:2503898/72‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 1:8224943/1‑72 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 2:1411388/1‑72 TTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA < 2:3792696/72‑1 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA < 1:4950649/72‑1 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA > 2:118524/1‑72 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA > 1:8613829/1‑72 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT > 2:8752607/1‑72 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT < 1:1188487/72‑1 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT > 2:6319567/1‑72 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 1:2473512/1‑72 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 2:1240733/1‑72 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 2:3663707/1‑72 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG > 2:4776567/1‑72 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG > 2:3880660/1‑72 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG < 2:2475332/72‑1 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC < 2:1494398/72‑1 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC < 1:5445926/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 2:1430443/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG > 1:4322562/1‑72 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 1:610098/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 2:2624407/72‑1 CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/880612‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < NC_012967/904682‑904612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |