| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 188 (0.740) | 17 (0.080) | 17/114 | 9.1 | 12.5% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 87 (0.430) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 130 total aligned reads displayed.
CGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904612‑904753 | cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 2:1430443/1‑72 (MQ=255)cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 1:610098/1‑72 (MQ=255)cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 1:4322562/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa > 2:1494398/1‑72 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa > 1:5445926/1‑72 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac < 2:3880660/72‑1 (MQ=255) ccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaac > 2:2475332/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 2:3663707/72‑1 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 1:2473512/72‑1 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 2:1240733/72‑1 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa < 2:8752607/72‑1 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa < 2:6319567/72‑1 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa > 1:1188487/1‑72 (MQ=255) ttttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaa < 1:8613829/72‑1 (MQ=255) ttttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaa > 1:4950649/1‑72 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa > 2:3792696/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa > 1:2503898/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 2:1411388/72‑1 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 2:3096369/72‑1 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa > 1:5240683/1‑72 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa > 1:4154073/1‑72 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa > 1:793853/1‑72 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c < 2:3744550/72‑1 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c < 1:2097597/72‑1 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c > 1:2978057/1‑72 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c < 2:4942311/72‑1 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑cc < 2:8516399/72‑1 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑cccc > 1:5830208/1‑71 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCa > 1:7245637/1‑72 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑cccct > 1:3043711/1‑70 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑cccct > 2:2885009/1‑70 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAt > 2:244791/1‑72 (MQ=255) ccATCCTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAt < 2:2084551/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAtt < 2:1865425/72‑2 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑c < 1:4550514/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑c < 2:2838023/72‑1 (MQ=255) tCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑Caa < 1:3885331/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAAc > 1:1555112/1‑72 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAAc > 1:8466690/1‑72 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAAcc < 1:5306533/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCt < 1:9136145/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCt > 1:3904611/1‑72 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCt < 1:2093240/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCt < 2:5345093/72‑1 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCt < 1:701542/72‑1 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCtt < 1:3330656/72‑1 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑a > 2:2363306/1‑72 (MQ=255) naaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑aa < 1:1045080/71‑1 (MQ=255) aaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑aa < 2:3957783/72‑1 (MQ=255) aaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑aa > 1:8590154/1‑72 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑aaa < 2:7228758/72‑2 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AAc > 2:4599959/1‑72 (MQ=255) aaaCAGTGCGTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AAc < 2:2062025/72‑1 (MQ=255) aaCAGTGCTTCTAACATCATGATTTTAAAGAGCGTAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AAcc < 1:9214985/72‑1 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAA‑CAACCTTG‑AAcac > 1:6150072/1‑70 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAAt > 2:318017/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATg < 1:3112924/72‑1 (MQ=255) gCTTCTAACATCATGAGTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATg < 2:340385/72‑1 (MQ=255) tCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCCT‑CAAACCTT‑AACCGAAAAGGCg > 1:8126027/1‑72 (MQ=255) tCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCg < 1:408817/72‑1 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCgg > 1:7266147/1‑72 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCggg > 2:7068708/1‑72 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCCTCCACCCTTA‑AACCAAAAT‑GCgggg > 2:5627324/1‑72 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCgggg < 2:7119757/72‑1 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAAACTTG‑AACCGAAATGGCgggg > 2:4495871/1‑72 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCggggg > 1:8611758/1‑71 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGt < 1:7043474/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCCT‑CAACCTTGAAACCCACATGCCggggg > 2:7800971/1‑71 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGtt < 2:8244169/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCCT‑CAACCCTG‑AACCGAAATAggggggggg > 2:501003/1‑69 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTg < 2:1108989/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTg < 2:2751156/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTg < 1:8112618/72‑1 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGa > 2:4643442/1‑72 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGa < 1:4407143/72‑1 (MQ=255) catGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAt < 2:610994/72‑1 (MQ=255) atGATTTTAAAAAGCATAAATTACAGCAAACAAAAAA‑CCCAA‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑g < 2:3086698/72‑1 (MQ=255) tGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTT‑AACCGAAATGGCGGGGGtggt‑‑gg > 2:354606/1‑72 (MQ=255) gATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGGTGAT‑‑ggg > 1:4693976/1‑72 (MQ=255) aTTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGGTGAA‑‑gggg > 1:4355183/1‑71 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCt < 1:6819879/72‑1 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGGTGAT‑‑GGGCt > 2:6920871/1‑72 (MQ=255) tttAAAGAGCATAAATGTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTc < 2:4141190/72‑1 (MQ=255) ttAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CACCCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTcc < 2:6317592/72‑1 (MQ=255) ttAAAGAGCATAAATTACAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAAGGGCGGGGTTGAT‑‑GGGCTcc < 2:7460058/72‑1 (MQ=255) tAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTCca < 1:9084300/72‑1 (MQ=255) aaaaGAAAATAAATTACAGGAAAAAAAAAA‑CCCAT‑CACCCTTG‑AACCGAAAGGGCGGGGTTGAT‑‑GGGCTCca < 2:2960696/71‑1 (MQ=255) aaaGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTCcac > 1:1895429/1‑72 (MQ=255) aaaGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTCcac > 1:7458398/1‑72 (MQ=255) gaaaaaTTTCAAGAAAAAAAAAACCCCAT‑CACCCTTG‑AACCGAAAGGGCGGGGTTGAT‑‑GGGCTCCACAAAAt < 2:6288626/69‑1 (MQ=255) cATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTCCACAAAATg > 1:9211629/1‑72 (MQ=255) tAAATTTCAGCAAAAAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTCCACAAAATggg < 1:2099132/72‑1 (MQ=255) anaTTCCAGAAAAAAAAAAC‑CCCAT‑CANCCTTA‑AACCGAAATGGCGGGTTTGAT‑‑GGGCTCCACAAAATgggg < 1:895675/72‑1 (MQ=255) aaaCTTCA‑GCAACAAAAAACCCCAA‑CAGCCTTA‑AACAAAAATGGGGGGGTTGAG‑‑GGGCTCCACAAAATgggg < 2:4949337/72‑1 (MQ=255) aTTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGGTGAN‑‑TGGCTCCCCAAAAAgggggg > 1:3490656/1‑70 (MQ=255) tttCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGGTGAT‑‑GGGGGCCCCAAAAAAGGGaga > 2:3989680/1‑70 (MQ=255) tCAGGCAACAAAAAACCCCCC‑CAACCTTA‑AACCAAAAGGCGGGGGGGGGT‑‑GGGGGCCCCAAAAAGGGGagaa > 2:5695618/1‑69 (MQ=255) tCAGGCAACAAAAAA‑CCCCC‑CAACCCTT‑TACCCCAAAGGCGGGGGGGGTGGGGGCCGCACAAAATggggggc > 2:3855562/1‑69 (MQ=255) aGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGGTGAT‑‑GGGCTCCACCAAAAGGGGACATCaa > 1:6205419/1‑72 (MQ=255) caacaaAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGGTGAT‑‑GGGCTCCACAAAATGGGGACATCAAAGa > 2:7476029/1‑72 (MQ=255) | CGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCCAT‑CAACCTTG‑AACCGAAATGGCGGGGTTGAT‑‑GGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904612‑904753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |