| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 922312 | 250 (0.990) | 3 (0.010) | 3/126 | 15.8 | 1.3% | coding (693/831 nt) | amiD | N‑acetylmuramoyl‑L‑alanine amidase AmiD |
| ? | NC_012967 | 1491704 = | 250 (1.110) | coding (1472/2103 nt) | yncD | TonB‑dependent receptor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGGCGCGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/922234‑922312‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaacctAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC > NC_012967/1491704‑1491774 CGGGCGCGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGGGCTTTTGGCGCGCTACGGTTATGACGT > 2:8704235/1‑72 GGGCGCGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTT < 2:2873781/72‑1 gtCGCGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTt < 2:3276416/70‑2 GGCGCGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTA < 1:6644295/72‑1 CGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACC > 1:6422421/1‑72 CGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACC > 2:2429231/1‑72 CGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACC > 2:8200542/1‑72 CGCGCCGCACACCCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGCTGAACC > 2:2605037/1‑72 GCGCCGCACACTCCTGTAGATACTANGTCATTGCTGGAGCTTTTTGCGCGCTACGGTTATGACGTTAAACCT > 1:1016566/1‑72 GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT > 1:5955889/1‑72 GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT > 1:6701/1‑72 GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT > 1:8466365/1‑72 GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT > 1:9098058/1‑72 GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT < 1:5756777/72‑1 GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT < 1:4326898/72‑1 ACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTAAGTTCATACCGCTTTGCCCATCA > 2:6108488/1‑72 AGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACA < 1:6108491/72‑1 tGTTAAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAA < 2:3833541/71‑1 TTAAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAAC < 2:45292/72‑1 TTAAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAAC > 2:7915499/1‑72 TAAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACC < 1:8782030/72‑1 TAAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACC < 1:3346898/72‑1 TAAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACC > 1:6909979/1‑72 AAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCa > 2:3233906/1‑71 AAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCT < 2:1352859/72‑1 AAACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCT > 1:2521961/1‑72 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 1:6825936/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 1:6524222/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 1:9004224/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 1:4881844/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 2:1723704/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 2:1821891/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 2:5713759/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 2:6268451/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 2:2754731/72‑1 AACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTC < 1:2928750/72‑1 ACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCG < 2:7874739/72‑1 ACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCG < 2:9224362/72‑1 ACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCG < 1:652994/72‑1 ACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCG > 1:5023764/1‑72 ACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCG > 1:4123401/1‑72 ACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCG < 1:3403255/72‑1 ACCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCG > 1:1225540/1‑72 CCTAAGTTCATGCCGCTTTGCCCATCAGCACTATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGC < 2:6937181/72‑1 CCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGC < 1:2860736/72‑1 CCTAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGC < 1:255238/72‑1 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC < 1:6766975/72‑1 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC < 1:6385229/72‑1 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC < 2:4301364/72‑1 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC > 2:4927992/1‑72 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC < 1:3471186/72‑1 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC < 2:7739829/72‑1 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC < 1:2191348/72‑1 TAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC < 1:1336507/72‑1 CGGGCGCGCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/922234‑922312‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaacctAAGTTCATACCGCTTTGCCCATCAGCACGATAAGACAGCTCATTAATCGTCGGCGTTTCAAAACCTCGCCC > NC_012967/1491704‑1491774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |