| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 922312 | 250 (0.990) | 3 (0.010) | 3/126 | 15.8 | 1.3% | coding (693/831 nt) | amiD | N‑acetylmuramoyl‑L‑alanine amidase AmiD |
| ? | NC_012967 | 1491704 = | 250 (1.110) | coding (1472/2103 nt) | yncD | TonB‑dependent receptor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 257 total aligned reads displayed.
GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATAA > NC_012967/922241‑922383 | gcgcCGCACACTCCTGTAGATACTANGTCATTGCTGGAGCTTTTTGCGCGCTACGGTTATGACGTTAAACCt > 1:1016566/1‑72 (MQ=255)gcgcCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCt < 1:4326898/72‑1 (MQ=255)gcgcCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCt < 1:5756777/72‑1 (MQ=255)gcgcCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCt > 1:8466365/1‑72 (MQ=255) gccgcACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtga > 2:7803680/1‑72 (MQ=255) gccgcACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtga < 1:8781270/72‑1 (MQ=255) gccgcACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtga > 2:6174057/1‑72 (MQ=255) gccgcACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtga > 2:714210/1‑72 (MQ=255) ccgcACACTCCTGTAGATACNACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgat < 1:3491032/72‑1 (MQ=255) ggcACACGCCTGTAGATACTACATCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgata < 2:28300/71‑1 (MQ=255) cgcACACTCCTGTAGATACTACGTCATTGCTGTAGCTTTTGGCGCGTCACGGTTTTGACGTTAAATCtgata > 2:2568205/1‑72 (MQ=255) cgcACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgata < 2:6372960/72‑1 (MQ=255) gcACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgatat > 2:3473855/1‑72 (MQ=255) cacaCTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgatatg > 2:5645217/1‑72 (MQ=255) cacaCTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgatatg > 2:5225364/1‑72 (MQ=255) cacaCTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgatatg < 1:8006348/72‑1 (MQ=255) acacTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgatatga < 1:2386103/72‑1 (MQ=255) gacTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCtgatatgat < 1:2491137/71‑1 (MQ=255) cTCCTGTAGATACTACGTCATTGCTGGAGCTGTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATAc < 1:290353/72‑1 (MQ=255) ccTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcg < 1:3399021/72‑1 (MQ=255) ccTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcg > 1:6773382/1‑72 (MQ=255) cTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgc < 2:8657690/72‑1 (MQ=255) tGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcg < 2:76472/72‑1 (MQ=255) tGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcg > 1:4437205/1‑72 (MQ=255) tGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcg > 2:2844742/1‑72 (MQ=255) gTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcgc < 1:7400191/72‑1 (MQ=255) gTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcgc < 2:3905960/72‑1 (MQ=255) gTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcgc < 2:4217317/72‑1 (MQ=255) tAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcgcg > 2:2161309/1‑72 (MQ=255) tAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACcgcgcg < 1:3961411/72‑1 (MQ=255) aGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGa < 1:9019051/72‑1 (MQ=255) tactacGTCATTGCTGGATCTTTTGACGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGagca < 1:3088097/72‑1 (MQ=255) tactacGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGagca < 1:7125814/72‑1 (MQ=255) ctacGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGagcagc > 2:1859404/1‑72 (MQ=255) ctacGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGagcagc < 2:85327/72‑1 (MQ=255) tacGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAgcg > 1:6201957/1‑72 (MQ=255) tacGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAgcg < 1:7815414/72‑1 (MQ=255) taagTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAgcg < 1:2205300/69‑1 (MQ=255) tCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGgcgc > 1:1256616/1‑72 (MQ=255) cATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACGGCGCGAGCGGCGGcgcg < 2:5351145/72‑1 (MQ=255) cATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGcgcg > 1:8166911/1‑72 (MQ=255) aTTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGt > 1:7875754/1‑72 (MQ=255) aTTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGt < 1:4830820/72‑1 (MQ=255) aTTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGt > 2:1555653/1‑72 (MQ=255) ttGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTg < 1:3759680/72‑1 (MQ=255) ttGCTGGAGCTTTTGGCGCGCTACGGNTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTg < 1:628557/72‑1 (MQ=255) gCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGAt > 2:4438832/1‑72 (MQ=255) gCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGAt > 1:5955399/1‑72 (MQ=255) cTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGAtt > 1:4012968/1‑72 (MQ=255) tGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTa < 2:5149057/72‑1 (MQ=255) ggAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTAt > 2:7007960/1‑72 (MQ=255) ggAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTAt > 2:5463228/1‑72 (MQ=255) gAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATg > 2:471989/1‑72 (MQ=255) gAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATg > 2:3812786/1‑72 (MQ=255) gCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGc < 1:7203054/72‑1 (MQ=255) cTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCa < 2:3985584/72‑1 (MQ=255) ttGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTc > 2:2659947/1‑72 (MQ=255) ttGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTc < 1:8316180/72‑1 (MQ=255) cgcgcTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGa > 1:3192893/1‑72 (MQ=255) cgcgcTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGa < 1:1466010/72‑1 (MQ=255) gcgcTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGAt < 1:3872717/72‑1 (MQ=255) cgcTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATg < 1:1626940/72‑1 (MQ=255) gcTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGc < 1:5098748/72‑1 (MQ=255) gcTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGAGGc > 1:8585097/1‑72 (MQ=255) cTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCa < 2:3707080/72‑1 (MQ=255) cTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCa < 2:8067995/72‑1 (MQ=255) tACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAt < 1:5261795/72‑1 (MQ=255) tACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAt > 2:6806678/1‑72 (MQ=255) tACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAt > 1:8880048/1‑72 (MQ=255) tACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAt > 2:3672177/1‑72 (MQ=255) aCGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAtt < 1:3163197/72‑1 (MQ=255) aCGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAtt < 2:7947113/72‑1 (MQ=255) cGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAttt > 1:604069/1‑72 (MQ=255) cGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCAttt < 1:6499381/72‑1 (MQ=255) ggTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTc > 2:6858930/1‑72 (MQ=255) ggTTATCACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTc < 2:645151/72‑1 (MQ=255) gTTATTACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTcc < 1:1867238/72‑1 (MQ=255) gTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTcc > 1:4795853/1‑72 (MQ=255) gTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTcc > 2:3032936/1‑72 (MQ=255) tATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGc > 2:5989025/1‑72 (MQ=255) tATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGc > 2:6052402/1‑72 (MQ=255) tATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGc > 1:5504235/1‑72 (MQ=255) tGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGccc < 2:12993/72‑1 (MQ=255) tGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGccc < 1:9116972/72‑1 (MQ=255) gACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCg < 1:3001230/72‑1 (MQ=255) cGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGAc < 2:663850/72‑1 (MQ=255) cGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGAc < 1:6644837/72‑1 (MQ=255) cGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGAc > 2:7442587/1‑72 (MQ=255) tAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGtt > 2:9105664/1‑72 (MQ=255) tAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGtt < 1:5970790/72‑1 (MQ=255) tAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGtt < 2:4934992/72‑1 (MQ=255) tAAACCGGATATGATACCGGGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGtt < 2:8499701/72‑1 (MQ=255) aaaCCTGATATGATACGGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTta < 1:3640451/72‑1 (MQ=255) ccTGATTTGATACCGCGCGGGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTtatat < 1:4234996/72‑1 (MQ=255) cTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTtatata > 2:8188314/1‑72 (MQ=255) cTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTtatata > 2:8442185/1‑72 (MQ=255) tgatatgataCCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCCGATGCATTTCCGCCCGACGTTATATaa > 2:4776167/1‑72 (MQ=255) tgatatgataCCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATaa < 1:7303537/72‑1 (MQ=255) tgatatgataCCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATaa > 2:8795706/1‑72 (MQ=255) tgatatgataCCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATaa > 2:8865161/1‑72 (MQ=255) | GCGCCGCACACTCCTGTAGATACTACGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGATACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATAA > NC_012967/922241‑922383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |