| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 1686324 | 240 (0.950) | 3 (0.010) | 3/136 | 16.2 | 1.2% | coding (2212/2223 nt) | rsxC | electron transport complex subunit RsxC |
| ? | NC_012967 | = 1686489 | 270 (1.110) | coding (154/1059 nt) | rsxD | electron transport complex subunit RsxD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1686251‑1686324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaCCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCACG < NC_012967/1686489‑1686419 TCCGCGCAAAGCTGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGT < 1:4672500/72‑1TCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGT < 2:8840828/72‑1 aCGCACAAGGCAGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA < 2:3171485/71‑1 CCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA > 1:6119690/1‑72 CCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA > 2:4165845/1‑72 CCGCGAAAGGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA < 1:24545/72‑1 agaGCAGAGCGGAGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAA < 1:8547646/69‑1 CGCGCAGAGCGGCCATTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAA < 2:267322/72‑1 CGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAA < 2:5192726/72‑1 CGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCCCCGGCCCAAAAAGCCGCCCCGCAGACGGCTGTAA > 2:6960261/1‑72 AAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCCGCAGAAGGGTGTAACCGAgg > 2:4715754/1‑70 GCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAACCGATGCCAACAGGATC < 1:4573539/56‑1 GCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAACCGATGCCAACAGGATC > 2:4573538/1‑56 TAACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCA < 1:7036228/72‑1 TAACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCA > 2:3164521/1‑72 TAACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCA < 2:4314729/72‑1 TAACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCCGGCA > 2:8277621/1‑72 AACCGNAGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCAC < 2:3510342/72‑1 AACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCAC < 2:2271414/72‑1 AACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCAC > 1:8212654/1‑72 AACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCAC < 2:7075751/72‑1 ACCGATGCCCACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCACG < 2:4188119/72‑1 ACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCACG > 1:3677826/1‑72 ACCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCACG < 1:590124/72‑1 TCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/1686251‑1686324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaCCGATGCCAACAGGATCTGAACGAGAGTACCCCAACCAAAAAACCACAGTTGCGCTGCGATTCCTGGCACG < NC_012967/1686489‑1686419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |