| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 1686324 | 240 (0.950) | 3 (0.010) | 3/136 | 16.2 | 1.2% | coding (2212/2223 nt) | rsxC | electron transport complex subunit RsxC |
| ? | NC_012967 | = 1686489 | 270 (1.110) | coding (154/1059 nt) | rsxD | electron transport complex subunit RsxD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 245 total aligned reads displayed.
CGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATT > NC_012967/1686253‑1686395 | cgcgCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCCCCGGCCCAAAAAGCCGCCCCGCAGACGGCTGTaa > 2:6960261/1‑72 (MQ=255) gcgcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTaaa > 1:8655387/1‑72 (MQ=255) gcgcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTaaa > 1:3237520/1‑72 (MQ=255) cgcAAAGCGGCAGTTGCCGCGGCTATNGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAAc < 1:626830/72‑1 (MQ=255) cgcAAAGCGGCAGTTGCCGCGGCCATTGCCCGCGCTCCGGTCAACAAACACGTCCAGCAGCACGTTGTCAAc > 2:6120718/1‑72 (MQ=255) gcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACg < 2:5440578/72‑1 (MQ=255) gcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTGTTAAACg > 1:1405153/1‑72 (MQ=255) gcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGGTGTAAACg > 1:6724835/1‑72 (MQ=255) aaaGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCCAACAAGCCGTCCGGCAGCAGGTCGTTAATGAg > 1:9211073/1‑72 (MQ=255) aaaGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCCAAAAAGCCGCCCAGCCGAAGGTTGTAAACGAg > 2:6640547/1‑72 (MQ=255) aaaGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCGGCAGAAGGTTGTAAACGAg > 1:5260276/1‑72 (MQ=255) aaaGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAg > 1:3794480/1‑72 (MQ=255) aGCGGCAGTTGCCGCGGCTATTTCCCGCGCTCCGGCCAAAAAAGCCGCCCCGCAGAAAGGTGTAAACGAGGa > 2:5260514/1‑72 (MQ=255) ggCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGAcaa > 1:3164522/1‑70 (MQ=255) ggCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTa > 1:2970802/1‑72 (MQ=255) ggCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTa < 2:265168/72‑1 (MQ=255) gccAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTa < 1:3332564/70‑1 (MQ=255) cAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTaaa > 1:5740927/1‑72 (MQ=255) aGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAt < 2:2586481/72‑1 (MQ=255) aGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAt < 2:4445771/72‑1 (MQ=255) aGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAt > 1:8233688/1‑72 (MQ=255) aGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAt > 2:1431903/1‑72 (MQ=255) ttGCCGCGGCTATTGCCCGCGCTCAGGCCACAAAAGCCGACCAGGAGAAGGTCGGACACGAGGAGTAAATgg > 1:516568/1‑72 (MQ=255) tGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGt < 1:5428575/72‑1 (MQ=255) tGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGt > 2:5701931/1‑72 (MQ=255) tGCCGCGGCCCTTGCCCGCGCTCAGGCCCACAAAGCCGCCCACCAGCACGATGTACACGAGGACTCAATGGt > 2:1335846/1‑72 (MQ=255) ngcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAtt < 1:1048727/71‑1 (MQ=255) cgcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGGAtt > 2:709046/1‑72 (MQ=255) gcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTc > 1:5144383/1‑72 (MQ=255) gcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTc > 2:7897154/1‑72 (MQ=255) gcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTc < 1:1612295/72‑1 (MQ=255) gcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTc < 2:8420688/72‑1 (MQ=255) gcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAATGTATTc > 1:2135470/1‑72 (MQ=255) gcgGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTGGTAAAAGGGGACTAAATGGTGttg > 2:5035390/1‑71 (MQ=255) ggCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAg < 2:1479038/72‑1 (MQ=255) ggCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAg > 1:8698047/1‑72 (MQ=255) gCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGa < 2:6296104/72‑1 (MQ=255) cTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGaa > 2:2858449/1‑72 (MQ=255) aTTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAta > 1:3681657/1‑72 (MQ=255) ttGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtag < 1:3627329/72‑1 (MQ=255) ttGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtag > 1:721631/1‑72 (MQ=255) ggCCGGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTGGTAAACGAGGACTAAATGGTATTCAGAAtagc < 2:5795720/71‑1 (MQ=255) gCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAAGGAGGACAAAATGGTATTGAGAAtagct > 2:4364780/1‑72 (MQ=255) gCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtagct < 2:4697253/72‑1 (MQ=255) cccGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtagcta < 1:8796875/72‑1 (MQ=255) cccGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtagcta < 1:9017935/72‑1 (MQ=255) ccGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtagctag < 2:4561753/72‑1 (MQ=255) cgcTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTc > 1:4848388/1‑72 (MQ=255) gcTCAGGCCAAAAAAGCCGCTCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTcc < 1:3476597/72‑1 (MQ=255) gcTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTcc < 2:7318157/72‑1 (MQ=255) gcTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTcc < 1:7984225/72‑1 (MQ=255) cTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTccc > 1:7610014/1‑72 (MQ=255) tCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTcccc < 2:1358890/72‑1 (MQ=255) tCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTcccc > 2:8572496/1‑72 (MQ=255) cAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCt > 2:1082112/1‑72 (MQ=255) cAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCt > 2:9201836/1‑72 (MQ=255) aGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATANCTAGCTCCCCtt > 1:971571/1‑72 (MQ=255) aGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGTTAGCTCCCCtt < 2:1849404/72‑1 (MQ=255) aGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCtt < 2:8753927/72‑1 (MQ=255) ggCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCNCCTta > 2:3509504/1‑72 (MQ=255) ggCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTta > 2:6669103/1‑72 (MQ=255) gCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTtat > 1:7130123/1‑72 (MQ=255) cAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATAc < 2:298697/72‑1 (MQ=255) aaaaaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATAcc < 1:4610333/72‑1 (MQ=255) aaaaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATAccc < 2:216535/72‑1 (MQ=255) aaaaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATAccc < 1:4408130/72‑1 (MQ=255) aaaaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATAccc > 2:1909566/1‑72 (MQ=255) aaaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCa < 2:5173172/72‑1 (MQ=255) aaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCAt < 2:3985461/72‑1 (MQ=255) aaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCAt > 2:6316308/1‑72 (MQ=255) aaaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCAt < 2:7272763/72‑1 (MQ=255) aaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATa > 2:7969683/1‑72 (MQ=255) aaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATa > 2:8946745/1‑72 (MQ=255) aaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATa > 1:2229268/1‑72 (MQ=255) aaGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATa < 1:8519709/72‑1 (MQ=255) gccgccCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAAc < 1:829289/72‑1 (MQ=255) ccgccCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAAcc < 1:4151118/72‑1 (MQ=255) ccgccCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAAcc < 2:5131877/72‑1 (MQ=255) ccgccCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAAcc < 1:7491170/72‑1 (MQ=255) ccgccCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAAcc > 2:4304927/1‑72 (MQ=255) gccCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAg > 1:1343583/1‑72 (MQ=255) cccAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAgc > 1:7847262/1‑72 (MQ=255) cccAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAgc < 2:4113189/72‑1 (MQ=255) cagcagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAgcgc > 1:2085129/1‑72 (MQ=255) cagcagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAgcgc > 1:4323608/1‑72 (MQ=255) agcagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCa < 2:7706219/61‑1 (MQ=255) agcagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCa > 1:7706222/1‑61 (MQ=255) gcagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCa < 2:2603905/72‑1 (MQ=255) gcagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCa > 1:1397253/1‑72 (MQ=255) cagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAg > 1:1805756/1‑72 (MQ=255) cagAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAg > 1:1271751/1‑72 (MQ=255) gAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGAc < 2:2415613/72‑1 (MQ=255) aaGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACa < 1:7734601/72‑1 (MQ=255) aGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACAt < 2:5914318/72‑1 (MQ=255) ggTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATc > 1:2600687/1‑72 (MQ=255) tGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATcgcg < 1:6821998/72‑1 (MQ=255) tGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATcgcg > 2:3714501/1‑72 (MQ=255) tGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATcgcg > 2:9063868/1‑72 (MQ=255) tAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCa > 1:2651378/1‑72 (MQ=255) aaCGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCAtt < 1:5594675/72‑1 (MQ=255) | CGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATT > NC_012967/1686253‑1686395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |