| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 2515918 | 252 (1.000) | 6 (0.030) | 5/126 | 14.5 | 2.8% | coding (770/2016 nt) | tmcA | tRNA cytosine(34) acetyltransferase TmcA |
| ? | NC_012967 | 2778952 = | 199 (0.890) | coding (1447/1800 nt) | cysJ | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/2515840‑2515918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagtTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGGG > NC_012967/2778952‑2779022 cACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC < 1:4046474/71‑1AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCCTCGACCACC > 1:5357027/1‑72AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC < 2:6963619/72‑1AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC > 1:2721824/1‑72AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC > 2:2267596/1‑72AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC < 2:8616156/72‑1AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC > 2:3564632/1‑72AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC < 1:4439982/72‑1AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC > 2:7977552/1‑72AACGTGCGAGGAAAGNGCNTTACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACC < 2:6538647/72‑1 ACGTTCGAGGAAAACGCGATACCAGTTGATGCTACAATGGTGCAGGTATGGCTGCGGCTTCATCGACCACCA < 1:504681/72‑1 ACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCA < 1:2207397/72‑1 ACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCA < 2:5721847/72‑1 ACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCA > 1:9108500/1‑72 ACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCA < 1:4347944/72‑1 CGTTCGAGGAAANCGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAG < 1:987886/72‑1 CGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAG > 2:1961525/1‑72 GTTGGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTGTGGCTGCGGCTTCATCGACCACCAGC < 2:5600135/72‑1 GTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGTCGCAGGTATGGCTGCGGCTTCATCGACCACCAGC < 2:127746/72‑1 GTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGC > 2:7816774/1‑72 GTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGC < 1:4422794/72‑1 TCGAGNAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCA < 2:3523183/72‑1 TCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCA > 2:7839645/1‑72 TCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCCTCATCGACCACGAGCCA > 2:6732512/1‑72 CGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAG > 1:6632262/1‑72 CGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAG < 2:7992921/72‑1 GAGGAAAACGCGATACGANTGGATGCAACAATGGCGCGGGTATGGCTGCGGCTTCATCGACCACCAGCCAGT < 1:3552026/72‑1 GAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGT > 1:7806351/1‑72 GAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGT > 2:8789304/1‑72 GAGGAAAACCCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCACCGACCACCAGCCAGT > 1:5204002/1‑72 GAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTTgg > 2:3492132/1‑70 TGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTTTTTTCCCGGCGCTTCATCGGCA > 2:5266092/1‑64 TGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTTTTTTCCCGGCGCTTCATCGGCA < 1:5266095/64‑1 gACCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCC < 2:2097615/71‑1 aACCGGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCC < 1:4168433/71‑1 CCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCAGGTTGCTGCATAAAGGCGCGGAACGGCGGGATGCCGG < 2:5538929/72‑1 CAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGGACGGTGCGATGCCGGT > 2:9103973/1‑72 CAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGT < 1:5425607/72‑1 CAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGT < 1:3861275/72‑1 CAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAAAGGAGCGATGCCGGT > 2:8006756/1‑72 GCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGC > 2:7105057/1‑72 GCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGC > 2:8795019/1‑72 GCCAGTTTTTCCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGC < 1:8415024/72‑1 CCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCC < 2:3051109/72‑1 CCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCC > 2:4027813/1‑72 CAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCT < 1:8519516/72‑1 CAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCT < 2:589328/72‑1 CAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCT > 2:5972100/1‑72 CAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCT < 1:817071/72‑1 CAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCT < 2:7868792/72‑1 CAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCT < 1:4995558/72‑1 AGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATCACGGCGCGGAACGGCGCGAGTCCGGGGCCcg > 2:3557255/1‑70 AGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTG < 2:5113938/72‑1 AGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTG > 1:7335743/1‑72 AGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTG < 1:6454243/72‑1 GTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGG < 1:1252834/72‑1 GTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGG < 1:8666202/72‑1 GTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGG < 2:5235123/72‑1 GTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGGGCCTGG > 1:7919567/1‑72 GTTTTTTCCCGGCGCTTCATCGGCAGCACGNTGCTGCATAAAGGNGCGGAACGGCGCGATGCCGGTGCCTGG < 1:457045/72‑1 GTTTGTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGG < 2:1399128/72‑1 TTTTGTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGGG < 2:8375868/72‑1 AACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/2515840‑2515918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagtTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGGG > NC_012967/2778952‑2779022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |