New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 2515918252 (1.000)6 (0.030) 5/126 14.5 2.8% coding (770/2016 nt) tmcA tRNA cytosine(34) acetyltransferase TmcA
?NC_012967 2778952 = 199 (0.890)coding (1447/1800 nt) cysJ NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 227 total aligned reads displayed.

GACGTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGGG  >  NC_012967/2778881‑2779022
                                                                       |                                                                      
gACGTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGtt                                                                        <  1:168600/72‑1 (MQ=255)
aaCGTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGtt                                                                        <  1:1248460/71‑1 (MQ=255)
 aCGTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGttt                                                                       <  2:7611256/72‑1 (MQ=255)
  cGTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGtttt                                                                      <  2:5059945/72‑1 (MQ=255)
   gTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGttttt                                                                     <  1:8853095/72‑1 (MQ=255)
   gTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAACAACAGCCAGttttt                                                                     >  1:8468857/1‑72 (MQ=255)
    tAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAGCAGCCAGtttttt                                                                    <  1:8726363/72‑1 (MQ=255)
     aGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGTTTGCCAAAGAACAGCCAGTTTTTTc                                                                   <  2:5542243/72‑1 (MQ=255)
      gcgcTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTcc                                                                  <  1:678367/72‑1 (MQ=255)
       cgcTACCGCTCCGCCGGGTGTGGGAAGTCGTCCTTAAAGGGCGGGTGGCAAAAGAACAGCCAGTTTTTTccc                                                                 <  1:3040496/72‑1 (MQ=255)
        gcTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCg                                                                <  1:7001415/72‑1 (MQ=255)
         cTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCgg                                                               <  1:5206098/72‑1 (MQ=255)
          tGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGgc                                                              <  2:8218950/72‑1 (MQ=255)
          tGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGgc                                                              <  1:235114/72‑1 (MQ=255)
            ccACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGgcgc                                                            <  1:3313775/72‑1 (MQ=255)
            ccACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGgcgc                                                            <  1:7893903/72‑1 (MQ=255)
            ccACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGgcgc                                                            >  2:4767392/1‑72 (MQ=255)
             cACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCCGTTGGTTCCCGGGGCt                                                           >  1:4497809/1‑72 (MQ=255)
             cACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCTCGCGCt                                                           >  2:1046768/1‑72 (MQ=255)
              aCTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCtt                                                          >  1:8595937/1‑72 (MQ=255)
               cTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTc                                                         <  2:7557407/72‑1 (MQ=255)
                tCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCttta                                                        <  1:1321003/72‑3 (MQ=255)
                  cACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATc                                                      <  1:5308977/72‑1 (MQ=255)
                   aCCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCg                                                     >  2:424390/1‑72 (MQ=255)
                   aCCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCg                                                     >  2:6742578/1‑72 (MQ=255)
                   aCCTGGTAGAGGAAATCATCCGTAAAGTGCGGGTTGCCAAAGAACGGCCAGTTTTTTCCCGGCGCTTCATCg                                                     >  1:3382234/1‑72 (MQ=255)
                     cTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgc                                                   >  1:7262134/1‑72 (MQ=255)
                      tGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgca                                                  <  1:4975789/72‑1 (MQ=255)
                      tGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgca                                                  <  1:7435059/72‑1 (MQ=255)
                       ggTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgcag                                                 <  1:7968807/72‑1 (MQ=255)
                       ggTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgcag                                                 >  2:6211032/1‑72 (MQ=255)
                        gTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgcagc                                                >  1:5482859/1‑72 (MQ=255)
                         tAGAGGAAATCTTGCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgcagca                                               <  1:372322/72‑1 (MQ=255)
                         tAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgcagca                                               >  1:1805437/1‑72 (MQ=255)
                         tAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgcagca                                               <  2:5025720/72‑1 (MQ=255)
                         tAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGgcagca                                               >  1:2606892/1‑72 (MQ=255)
                          agagGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCAc                                              >  1:3929939/1‑72 (MQ=255)
                           gagGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACg                                             >  1:5053204/1‑72 (MQ=255)
                           gagGAAATCTTCCGTAAAGTGCGGGTTGCAAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACg                                             <  2:7258634/72‑1 (MQ=255)
                            agGAAATCTTCCGTAAAGTGCGNGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGt                                            <  1:4064954/72‑1 (MQ=255)
                            agGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGt                                            >  2:587331/1‑72 (MQ=255)
                            agGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGt                                            >  1:4490875/1‑72 (MQ=255)
                            agGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGt                                            <  1:2693965/72‑1 (MQ=255)
                             ggAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGtt                                           <  2:2283917/72‑1 (MQ=255)
                             ggAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGtt                                           <  2:2839780/72‑1 (MQ=255)
                              gAAATCTACCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTtg                                          <  1:2109392/72‑1 (MQ=255)
                               aaaTCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTtgc                                         >  2:4327384/1‑72 (MQ=255)
                                aaTCTTCCGTAAAGTGCGGTTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTtgct                                        <  2:8087726/72‑1 (MQ=255)
                                 aTCTGCCGTAAGTGGCGGGTTGCAAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTtgctg                                       <  2:8314635/72‑1 (MQ=255)
                                  tCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTtgctgc                                      >  1:8563912/1‑72 (MQ=255)
                                  tCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTtgctgc                                      >  2:4001309/1‑72 (MQ=255)
                                   cTTCCGTAAGGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCa                                     <  2:3282020/72‑1 (MQ=255)
                                    ttCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCAt                                    >  1:8658125/1‑72 (MQ=255)
                                     gccGTAACGTGCTGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATa                                   <  2:6379532/71‑1 (MQ=255)
                                      ccGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATaa                                  >  1:1942920/1‑72 (MQ=255)
                                        gTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAg                                <  1:5131032/72‑1 (MQ=255)
                                        gTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAg                                >  2:4022305/1‑72 (MQ=255)
                                           aaGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGgcg                             >  2:600714/1‑72 (MQ=255)
                                            aGTGCGGGTTGCCAGAGTACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGgcgc                            <  2:8933440/72‑1 (MQ=255)
                                            aGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGgcgc                            <  1:3650726/72‑1 (MQ=255)
                                               gCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGa                         >  1:6143392/1‑72 (MQ=255)
                                               gCGGGTTGCAAAAAAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGa                         <  2:698067/72‑1 (MQ=255)
                                                cGGGTTGCCAAAGANNNGCCAGTTTTTTCCCGGCNCATCATCGGCAGCACGTTGCTGCATAAAGGCGCGGaa                        <  1:6536915/72‑1 (MQ=255)
                                                cGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGaa                        <  1:8371561/72‑1 (MQ=255)
                                                 gggTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAAc                       >  1:7990404/1‑72 (MQ=255)
                                                  ggTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACg                      <  1:4458876/72‑1 (MQ=255)
                                                   gTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACgg                     >  2:6138775/1‑72 (MQ=255)
                                                    ttGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGgc                    >  1:8976968/1‑72 (MQ=255)
                                                    ttGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGgc                    <  2:7442142/72‑1 (MQ=255)
                                                    tggCCAAAGACCAGCCAGTTTTTTCCCGGCGCTTCATCGGCGGCACGTTGCTGCATAAAGGCGCGGAACGgc                    <  1:3273364/70‑1 (MQ=255)
                                                     tGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGgcg                   <  2:4524476/72‑1 (MQ=255)
                                                      gCCAANGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCTCGGAACGgcgc                  <  2:415962/72‑1 (MQ=255)
                                                      gCCAAAGAACAGCCAGTTTGTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGgcgc                  <  1:7813787/72‑1 (MQ=255)
                                                       ccAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGcgcg                 <  1:2477650/72‑1 (MQ=255)
                                                       ccAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGcgcg                 <  2:6576807/72‑1 (MQ=255)
                                                       ccAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCCGCCTTAAGGCGCGGGACGGcgcg                 >  2:8343998/1‑72 (MQ=255)
                                                        cAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGa                >  2:8647928/1‑72 (MQ=255)
                                                        cAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGATGCATAAAGGCGCGGGACGGcgcgc                >  2:2526506/1‑71 (MQ=255)
                                                          aggAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTGGCTGCATAAAGGCGCGGAACGGGGCGATg              <  1:2970217/70‑1 (MQ=255)
                                                          aaGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGGCTGTTGCTGCATAAAGGCGCGGCACGGCgagagg              >  2:55382/1‑70 (MQ=255)
                                                          aaGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTCCTGCATAAAGGCGCGGAACGGCGCGacg              >  1:7752280/1‑70 (MQ=255)
                                                           aGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGc             <  2:6611200/72‑1 (MQ=255)
                                                             aaCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCg           >  2:9109494/1‑72 (MQ=255)
                                                             aaCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCg           <  2:6849461/72‑1 (MQ=255)
                                                             aaCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCg           >  2:3056030/1‑72 (MQ=255)
                                                             aaCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGACGCCg           >  1:7192961/1‑72 (MQ=255)
                                                              aCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCgg          <  2:4872585/72‑1 (MQ=255)
                                                              aCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCgg          >  2:1523461/1‑72 (MQ=255)
                                                              aCAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCgg          <  1:8811680/72‑1 (MQ=255)
                                                               cAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGt         <  1:3861275/72‑1 (MQ=255)
                                                               cAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAAAGGAGCGATGCCGGt         >  2:8006756/1‑72 (MQ=255)
                                                                 gCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGc       >  2:7105057/1‑72 (MQ=255)
                                                                 gCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGc       >  2:8795019/1‑72 (MQ=255)
                                                                   cAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCt     <  1:817071/72‑1 (MQ=255)
                                                                   cAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCt     <  2:7868792/72‑1 (MQ=255)
                                                                    aGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTg    >  1:7335743/1‑72 (MQ=255)
                                                                    aGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTg    <  1:6454243/72‑1 (MQ=255)
                                                                     gTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTgg   <  2:5235123/72‑1 (MQ=255)
                                                                     gTTTGTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTgg   <  2:1399128/72‑1 (MQ=255)
                                                                      ttttgtCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTggg  <  2:8375868/72‑1 (MQ=255)
                                                                       |                                                                      
GACGTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAAAGTGCGGGTTGCCAAAGAACAGCCAGTTTTTTCCCGGCGCTTCATCGGCAGCACGTTGCTGCATAAAGGCGCGGAACGGCGCGATGCCGGTGCCTGGG  >  NC_012967/2778881‑2779022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.