New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 2515918252 (1.000)6 (0.030) 5/126 14.5 2.8% coding (770/2016 nt) tmcA tRNA cytosine(34) acetyltransferase TmcA
?NC_012967 2778952 = 199 (0.890)coding (1447/1800 nt) cysJ NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 257 total aligned reads displayed.

GAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATTGTGCC  >  NC_012967/2515847‑2515989
                                                                       |                                                                       
gAGGAAAACGCGATACGANTGGATGCAACAATGGCGCGGGTATGGCTGCGGCTTCATCGACCACCAGCCAGt                                                                         <  1:3552026/72‑1 (MQ=255)
gAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGt                                                                         >  1:7806351/1‑72 (MQ=255)
gAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGt                                                                         >  2:8789304/1‑72 (MQ=255)
gAGGAAAACCCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCACCGACCACCAGCCAGt                                                                         >  1:5204002/1‑72 (MQ=255)
 aGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTc                                                                        <  1:5858824/72‑1 (MQ=255)
 aGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTc                                                                        >  1:3663300/1‑72 (MQ=255)
 aGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTc                                                                        <  2:7515084/72‑1 (MQ=255)
   gAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTTgg                                                                      >  2:3492132/1‑72 (MQ=255)
   gAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCgg                                                                      >  1:5802915/1‑72 (MQ=255)
     aaaCGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCgggc                                                                    >  2:6725528/1‑70 (MQ=255)
      aaCGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCtt                                                                   >  1:4294376/1‑72 (MQ=255)
       aCGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCtct                                                                  >  2:911004/1‑70 (MQ=255)
         gcgATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCTACCACCAGCCAGTCGGCTTGCt                                                                <  2:2661654/72‑1 (MQ=255)
         gcgATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCt                                                                <  1:3911117/72‑1 (MQ=255)
         gcgATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCCTGCt                                                                >  1:70357/1‑72 (MQ=255)
           gATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCGCCAGCCAGTCGGGCTGCTCa                                                              >  1:3149542/1‑72 (MQ=255)
           gATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGGTTGCTCa                                                              >  1:6147179/1‑72 (MQ=255)
           gATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCa                                                              >  1:8793018/1‑72 (MQ=255)
           gATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCa                                                              <  1:8304962/72‑1 (MQ=255)
            aTACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCCGTCGGCCTGCTcct                                                             >  2:7195689/1‑70 (MQ=255)
             tACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGGCAGTCGGGTTGCTCATc                                                            >  1:5319119/1‑72 (MQ=255)
             tACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGGTCATc                                                            >  1:5472094/1‑72 (MQ=255)
             tACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATc                                                            <  1:1818392/72‑1 (MQ=255)
             tACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATc                                                            <  1:5675569/72‑1 (MQ=255)
                cAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCt                                                         >  1:1540756/1‑72 (MQ=255)
                cAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCt                                                         <  1:8461549/72‑1 (MQ=255)
                cAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCt                                                         <  1:2695956/72‑1 (MQ=255)
                 aGTTGATGCAACAATGGCGCAGGTAGGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTg                                                        <  2:4726201/72‑1 (MQ=255)
                  gTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTgg                                                       >  1:4569572/1‑72 (MQ=255)
                  gTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTgg                                                       <  1:9073407/72‑1 (MQ=255)
                    tGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCCGCCAGTCGGCTTGGTCATCGCTgggc                                                     >  2:5776365/1‑70 (MQ=255)
                    tGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCt                                                     >  1:422036/1‑72 (MQ=255)
                    tGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCt                                                     >  2:6219617/1‑72 (MQ=255)
                    tGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCCCCTCGCTGGCt                                                     >  2:5004445/1‑72 (MQ=255)
                     gATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTa                                                    >  1:3952746/1‑72 (MQ=255)
                     gATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTa                                                    <  2:1567417/72‑1 (MQ=255)
                      aTGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTaa                                                   <  2:1286230/72‑1 (MQ=255)
                      aTGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTaa                                                   >  1:7321558/1‑72 (MQ=255)
                      aTGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCCGGCTaa                                                   >  1:7649838/1‑72 (MQ=255)
                        gCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACa                                                 <  1:8251354/72‑1 (MQ=255)
                        gCAACAAGGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACa                                                 <  2:8113639/72‑1 (MQ=255)
                         caacaaTGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACaa                                                <  1:1876077/72‑1 (MQ=255)
                           acaaTGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAgg                                              <  1:8129875/72‑1 (MQ=255)
                             aaTGGCGCAGGTATGGCTGCGGCTTCATCGNCCACCAGCCAGTCNGCTTGCTCATCGCTGGCTAACAAGGCa                                            <  1:452870/72‑1 (MQ=255)
                             aaTGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGGTAAAAAGGCa                                            >  1:8055309/1‑72 (MQ=255)
                             aaTGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCCAACCAGGCa                                            >  2:4071893/1‑72 (MQ=255)
                               tGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGGCGGGCAACCAGGCaac                                          >  2:7763234/1‑70 (MQ=255)
                                 gcgcAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCg                                        <  2:5909294/72‑1 (MQ=255)
                                 ccgcAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCg                                        <  2:8552522/71‑1 (MQ=255)
                                  cgcAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCgg                                       <  1:4942631/72‑1 (MQ=255)
                                  cgcAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCgg                                       <  1:3171742/72‑1 (MQ=255)
                                  cgcAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCgg                                       <  1:5597979/72‑1 (MQ=255)
                                  cacAGGTCTGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCgg                                       <  2:1060975/70‑1 (MQ=255)
                                   gcAGGTATGGCTGCGGTTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGgc                                      <  2:7008943/72‑1 (MQ=255)
                                    cAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGgcg                                     <  1:8649375/72‑1 (MQ=255)
                                    cAGGTATGGCGGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGgcg                                     <  2:6874016/72‑1 (MQ=255)
                                     aGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGgcgc                                    >  1:2922000/1‑72 (MQ=255)
                                      ggTATGGGTGCGGCTTCATCGACCCCCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCa                                   <  1:4416658/72‑1 (MQ=255)
                                      ggTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGCGTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCa                                   >  2:1637180/1‑72 (MQ=255)
                                       atATGGCGGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCaa                                  <  1:4660980/71‑1 (MQ=255)
                                         aTGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATa                                >  1:2045406/1‑72 (MQ=255)
                                         aTGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCCTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATa                                >  2:2319808/1‑72 (MQ=255)
                                            gCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAg                             >  1:2655690/1‑72 (MQ=255)
                                                cGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGaa                         >  1:6731991/1‑72 (MQ=255)
                                                 ggCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGaaa                        >  1:2208841/1‑72 (MQ=255)
                                                 ggCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGaaa                        <  2:3918881/72‑1 (MQ=255)
                                                  gCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAAc                       >  1:87019/1‑72 (MQ=255)
                                                   cTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACt                      <  1:2447716/72‑1 (MQ=255)
                                                   cTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCCAACAAGGCATCCGGCGCAACAAAGCGAAACt                      >  2:2413562/1‑72 (MQ=255)
                                                    ttCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACtt                     >  1:1274361/1‑72 (MQ=255)
                                                     tCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTtc                    >  2:1892500/1‑72 (MQ=255)
                                                      cATCGACCTCCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTtct                   <  1:7993827/72‑1 (MQ=255)
                                                      cATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTtct                   >  1:2842630/1‑72 (MQ=255)
                                                      cATCGACCACCAACCAGTCGGCTTGCTCATCGCTGGCTAAGAAGGCATCCGGCGCAATAAAGCGAAACTtct                   >  2:7830202/1‑72 (MQ=255)
                                                       ctCGCCCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTtctc                  <  2:75442/71‑1 (MQ=255)
                                                        tCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCg                 >  1:1138985/1‑72 (MQ=255)
                                                          gACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGcc               >  1:375305/1‑72 (MQ=255)
                                                          gACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGcc               <  1:607233/72‑1 (MQ=255)
                                                          gACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGcc               >  1:8959176/1‑72 (MQ=255)
                                                           acccccAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGccc              <  2:4835598/72‑1 (MQ=255)
                                                           accaccAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGccc              <  2:6346064/72‑1 (MQ=255)
                                                           accaccAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGccc              >  1:6868609/1‑72 (MQ=255)
                                                           accaccAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGccc              <  2:3952745/72‑1 (MQ=255)
                                                           accaccAGCCAGTCGGCTTGCCCAACGCCCGCTCACCAGGCATCCGGCGCAATAAAGCGAAACTTCTCGcca              >  2:3251029/1‑71 (MQ=255)
                                                            ccaccaGCCAGTCGGCATGCTCACCTCTGGCCAACAATGCATCCGCAGCACTAGAGCCAAACTTCTCTccgc             >  2:8822321/1‑70 (MQ=255)
                                                             ccccagccagTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGc            <  2:8452845/70‑1 (MQ=255)
                                                             ccccagccagTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGc            <  2:419188/70‑1 (MQ=255)
                                                             caccaGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGcccac            <  2:6178430/72‑3 (MQ=255)
                                                             caccaGCCAGTCGGCTTGCTCATCGCTGGCTAACAAAGGCTCCCGCGCAATAAAGCGGAACTTCccgcccgc            >  2:9183867/1‑72 (MQ=255)
                                                              accaGCCAGTCGGCTTGCTTATCGCTGGCTAACAAGGCATCCGGCGCAATACAGCGAAACTTCTCGCCCGCa           >  2:3762848/1‑72 (MQ=255)
                                                                cagccagTCGGCTTGCTCATCGCTGGCTAACAAGGCATCTGGAGCAATAAAGCGAAACTTCTCGCCCGCaaa         >  2:6408249/1‑72 (MQ=255)
                                                                 agccagTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCCAAt        >  2:1997366/1‑72 (MQ=255)
                                                                 agccagTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAAt        <  2:5337294/72‑1 (MQ=255)
                                                                    cagTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCCAATtgt     >  1:1091817/1‑72 (MQ=255)
                                                                     agTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATtgtg    >  1:6449070/1‑72 (MQ=255)
                                                                     agTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATtgtg    >  2:4614346/1‑72 (MQ=255)
                                                                     agTCGGCTTGCTCATCGCTGACTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATtgtg    >  1:744848/1‑72 (MQ=255)
                                                                       tCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATTGTGcc  <  1:6340328/72‑1 (MQ=255)
                                                                       tCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATTGTGcc  <  2:9076663/72‑1 (MQ=255)
                                                                       tCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATTGTGcc  <  2:6723576/72‑1 (MQ=255)
                                                                       |                                                                       
GAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGACCACCAGCCAGTCGGCTTGCTCATCGCTGGCTAACAAGGCATCCGGCGCAATAAAGCGAAACTTCTCGCCCGCAAATTGTGCC  >  NC_012967/2515847‑2515989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.