New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 3482676 =119 (0.470)76 (0.330) 53/130 3.6 47.7% coding (992/2706 nt) malT HTH‑type transcriptional regulator MalT
?NC_012967 = 3482700 58 (0.250)coding (1016/2706 nt) malT HTH‑type transcriptional regulator MalT
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 108 total aligned reads displayed.

AAATCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/3482752‑3482676
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTC  <  NC_012967/3482700‑3482630
                                                                                                                                                          
aacTCCCTGGGCCCTCCGGCTTTCGGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTG                                                                              <  2:8455447/69‑1
AAATCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTTCCACTG                                                                              >  2:6861475/1‑72
  ccCCCTGGCCCATCCAGCTTCCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGGCAGTTCCCACTGGC                                                                            <  1:2317559/70‑1
  agCCCCGGGGCATCCCAGCTTTCGGCGGCGGCAGGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGG                                                                             <  2:1125735/70‑1
  ATCCCTGGGCCATCCGGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGC                                                                            <  1:6103984/72‑1
  ATCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGTAGCTCCGCCGCCAGTTACCAATGGg                                                                            >  2:9024032/1‑71
   TCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCGCTGGCA                                                                           <  1:7287925/72‑1
   TCCCTGGCCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCA                                                                           <  1:6711784/72‑1
    CCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCCGTTCCCCCTGGCcg                                                                          >  2:6618674/1‑70
    CCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAG                                                                          <  1:7074663/72‑1
    CCCTGGGCCACCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAG                                                                          <  2:7271062/72‑1
     CCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCCCCCCGTTCCCCCTGGCgc                                                                          >  1:3417233/1‑70
     CCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGC                                                                         <  1:4759592/72‑1
     CCTGGCCCATCCAGCTTGCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGC                                                                         <  1:4321979/72‑1
      CTGGGCCCTCCCGCCTTTCTGGGGCGGCACGGTGGATTCCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGC                                                                         <  1:2901417/72‑1
      CTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCNGCCGCCAGTTCCCACTGGCAGCT                                                                        <  1:5927980/72‑1
      CTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCT                                                                        >  1:6981777/1‑72
       TGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTTGCAGCTC                                                                       >  1:6547169/1‑72
       TGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTC                                                                       >  1:6696360/1‑72
        ggcCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCC                                                                      <  2:4773003/69‑1
        GGGCCATCCAGCTTTCTGCTGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCCGTTTCCCCCTGGCGCTCC                                                                      >  1:117304/1‑72
        GGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCC                                                                      <  1:7277461/72‑1
         GGCCGTCCGGCTTTCGGCGCCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCG                                                                     <  2:2823118/72‑1
           cccTCCCGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCC                                                                   <  2:4547401/69‑1
           CCATCCAGCTTTCTGCGGCGGCACGGTAGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCC                                                                   >  1:4005871/1‑72
            CATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCG                                                                  <  2:7212575/72‑1
             ATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCGGTTCCCCCTTGCAGCCCCTCCGC                                                                 >  2:2553149/1‑72
             ATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCCGTTCCCACTGGCAGCTCCGCGGC                                                                 >  2:8845663/1‑72
             ATCCAGCTTTCTGCGGCGGCAAGGTGGATTTCCGGCAGCTCCGCCGCCAGATCCTACTGGCAGCTCCACCGC                                                                 >  1:1925208/1‑72
              TCCAGCTTTCTGCGGCGGCACGGTGGATTGCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCC                                                                <  1:6721259/72‑1
                CCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACCTGCAGCTCCGCCCCCc                                                               >  1:6043212/1‑71
                 CAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCCCCGCCcc                                                              >  2:4089107/1‑70
                  gGCTGTCGGCGGCGGCCGGGTGTATTCCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGT                                                             <  1:8421877/71‑1
                  AGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCGGTTCCCACTGGCAGCCCCGCCCCCcgc                                                             >  2:8921942/1‑69
                  AGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCCGCTCCGCCCCCcgc                                                             >  2:4844487/1‑69
                   GCTTCCGGCGGCGGCACGGGTGTTTGCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTT                                                            <  2:7730965/72‑1
                     CTTGCTGGGGCGGCAGGGTGGTTTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTC                                                           <  2:441071/72‑1
                      TTTCTGCGGCGCCCGGGTGGTTTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCC                                                          <  2:1876368/72‑1
                        TCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCCGGTCCCA                                                        >  2:3860653/1‑72
                         ccGCGGCGGACCGGCGCATTCCCGCCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCAC                                                       <  1:1503937/70‑1
                          TGCGGCCGCCCGGTGGATTCCCGCCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACT                                                      <  1:4699639/72‑1
                           GCGGCGGCCCGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTG                                                     <  1:4040076/72‑1
                           GCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCCGTTCCCACTGGCAGCCCCGCCCGCCGTTCCCGCTG                                                     >  1:4491016/1‑72
                           GCGGCGGCACGGGGGTTTTCGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTG                                                     <  1:7530003/72‑1
                            cgcCGGCAGCGTGGCTTCCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGG                                                    <  1:6227009/69‑1
                            CGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGGTCCCCCTGG                                                    >  2:8946012/1‑72
                             gcCGGCGCGGTGGTTTCCGGCCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGC                                                   <  1:702647/70‑1
                             GGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGC                                                   <  2:7298382/72‑1
                             GGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGC                                                   <  1:8240851/72‑1
                               ccGCACCGTTGGTTTCCGGGCAGCTCCGCCGCCAGTTCCCACAGGCAGCTCCGCCGCCAGTTCCCACTGGCA                                                  <  2:5079564/70‑1
                               CGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAG                                                 <  1:9125418/72‑1
                                GGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCCGTTCCCCCCTGCAGC                                                >  2:4125680/1‑72
                                 GCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCCGCTCCCACTGGCCGCc                                               >  2:7123456/1‑71
                                   cCGGGGGATTCCCGGCGGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCT                                             <  1:3864154/71‑1
                                    cgtTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTG                                            <  2:8607509/69‑1
                                         GATTCCCGCCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCA                                       <  1:6106368/72‑1
                                          ATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCCGTTCCCCCCGGCCGCGCCGGCGCAG                                      >  1:9178761/1‑72
                                              CCGGCAGCTCGGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAG                                  <  2:6096013/72‑1
                                                  GCAGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTA                               <  1:9153942/72‑1
                                                      GCTCCGCCGCCAGTGCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCA                            <  1:4977564/72‑1
                                                         CCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAAC                         <  1:7749288/72‑1
                                                         CCGCCGCCAGTTCCCACTGGCAGCGCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAAC                         <  1:8803828/72‑1
                                                         CCGCCGCCAGTTCCACCTGGCAGCCCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAAC                         <  2:6306685/72‑1
                                                          CGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACA                        <  2:7254303/72‑1
                                                           gcCCGCCAGTTCCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACA                        <  1:2850537/70‑1
                                                           GCCGCCAGTTCCCACTGGCAGCTCCGCCGCCCGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAG                       >  1:7177936/1‑72
                                                             CCGCCAGTTCCCACTGGCGGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGC                      <  1:4050710/72‑1
                                                               GCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGG                    >  1:5233429/1‑72
                                                               GCCAGTCCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGG                    <  1:1822248/72‑1
                                                                CCAGTTCCCACTGGCAGCTCNGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCNGG                   <  2:839920/72‑1
                                                                 CAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGT                  <  1:2297102/72‑1
                                                                  AGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGGTACCACACAGCGGGTG                 >  2:1629611/1‑72
                                                                      gCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATA              <  2:8655597/71‑1
                                                                      cCCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATA              <  1:7644073/71‑1
                                                                       CCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCCGGAAGTTACCAAACAGCGGGTGATAG             >  1:8351502/1‑72
                                                                       CCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAG             <  1:229974/72‑1
                                                                       CCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAG             <  2:2784130/72‑1
                                                                        CCACTGGCATCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGC            <  2:5356670/72‑1
                                                                        CCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTAACAAACAGCGGGTGATAGC            >  2:8657469/1‑72
                                                                         CACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCA           <  1:7412902/72‑1
                                                                          ACTGGCAGCTCCGCCGCCAGTTCCCATTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAG          <  1:4526681/72‑1
                                                                          ACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAG          >  1:7509784/1‑72
                                                                           cgGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA         <  1:6090142/70‑1
                                                                           CTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA         <  1:7069221/72‑1
                                                                           CTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA         >  1:9168626/1‑72
                                                                            gGGCAGCCACACCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA        <  2:3423027/71‑1
                                                                            TGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA        <  2:2444130/72‑1
                                                                            TGGCAGCTCCGCCCCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA        >  2:6273733/1‑72
                                                                             GGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAAC       <  1:3856993/72‑1
                                                                              tcgGCTCCGCCGCCAGTTCCCACTGGNAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACC      <  1:617914/69‑1
                                                                              aCAGCTCGGCCGCCAGTTCCCACTGGCGGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACC      <  1:1251698/71‑1
                                                                              GCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACC      >  2:7918597/1‑72
                                                                              GCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACC      <  1:1854811/72‑1
                                                                               agcCTCCCCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCA     <  1:6298768/69‑1
                                                                                AGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCAC    >  2:4932101/1‑72
                                                                                 cCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACT   <  1:2898419/71‑1
                                                                                 GCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACT   <  2:7445024/72‑1
                                                                                 GCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACT   <  2:4999640/72‑1
                                                                                 GCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACT   >  1:671170/1‑72
                                                                                  CTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTC  <  2:4747893/72‑1
                                                                                                                                                          
AAATCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGCTCCGCCGCCAGTTCCCACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/3482752‑3482676
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTC  <  NC_012967/3482700‑3482630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.