| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 3482676 = | 119 (0.470) | 76 (0.330) | 53/130 | 3.6 | 47.7% | coding (992/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482700 | 58 (0.250) | coding (1016/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATTCAT > NC_012967/3482629‑3482770 | cGAGTGTTTCTGCTATCACCCGCTGTTTGGTAGCTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGa < 1:2601440/72‑1 (MQ=255)cGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGa > 1:8601699/1‑72 (MQ=255)cGAGTGGTTCTCCTATCACCCGCTGTTTGTTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGa < 2:3410201/72‑1 (MQ=255) gAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAg > 2:4747893/1‑72 (MQ=255) aGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TTGCGGCGGacc > 1:2742513/1‑70 (MQ=255) aGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAgg > 1:2898419/1‑71 (MQ=255) aGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGc > 2:7445024/1‑72 (MQ=255) aGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGc > 2:4999640/1‑72 (MQ=255) aGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGc < 1:671170/72‑1 (MQ=255) gTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCt < 2:4932101/72‑1 (MQ=255) tGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGGGGAggct > 1:6298768/1‑69 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTNCCAGTGGGAAC‑TGGCGGCGGAGccga > 1:617914/1‑69 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGc < 2:7918597/72‑1 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGc > 1:1854811/1‑72 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCCGCCAGTGGGAAC‑TGGCGGCCGAGCTgt > 1:1251698/1‑71 (MQ=255) ggTTCGCCTATCACCCGCTGTTTGGTAACTCCCTGCGCCGGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGc < 2:2680738/72‑1 (MQ=255) gTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGcc > 1:3856993/1‑72 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGGGGCGGAGCTGcca < 2:6273733/72‑2 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGTGTGGCTGccc > 2:3423027/1‑71 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGcca > 2:2444130/1‑71 (MQ=255) tCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGcccg > 1:6090142/1‑70 (MQ=255) tCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGccag < 1:9168626/72‑3 (MQ=255) tCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGccag > 1:7069221/1‑70 (MQ=255) cTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGccagt < 1:7509784/72‑4 (MQ=255) cTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAATGGGAAC‑TGGCGGCGGAGCTGccagt > 1:4526681/1‑69 (MQ=255) ggagcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGGAATACACCGTG‑GCGCCGGCGAAA‑AGC‑GGACGGccc > 2:5447321/4‑72 (MQ=255) ggagcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGGTGGccc > 1:5334962/4‑72 (MQ=255) ggagcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGgcc > 2:4773003/4‑72 (MQ=255) ggagcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGccc > 1:7277461/4‑72 (MQ=255) gagcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCa < 1:6696360/70‑1 (MQ=255) gagcTGCAAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCa < 1:6547169/70‑1 (MQ=255) agcTGCCAGTGGGAAC‑TGGCGGCNGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAg > 1:5927980/2‑72 (MQ=255) agcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAg < 1:6981777/71‑1 (MQ=255) gcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGGAATCCACCGTG‑CCGCCCCAGAAAGGCG‑GGAGGGCCCAg > 1:2901417/1‑72 (MQ=255) gcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGCAA‑GCT‑GGATGGGCCAgg > 1:4321979/1‑72 (MQ=255) gcTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAgg > 1:4759592/1‑72 (MQ=255) gcgCCAGGGGGAACGGGGGGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAgg < 1:3417233/70‑1 (MQ=255) cggCCAGGGGGAAC‑GGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAggg < 2:6618674/70‑1 (MQ=255) cTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGGTGGCCCAggg > 2:7271062/1‑72 (MQ=255) cTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAggg > 1:7074663/1‑72 (MQ=255) tGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGGCCAGGGa > 1:6711784/1‑72 (MQ=255) tGCCAGCGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGa > 1:7287925/1‑72 (MQ=255) gcaaGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGAt < 2:6039105/69‑1 (MQ=255) gCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCC‑GGATGGCCCAGGGAt > 1:6103984/1‑72 (MQ=255) gCCAGTGGGAAC‑TGCCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGGAA‑GCT‑GGATGGGCCAggggg > 1:2317559/1‑70 (MQ=255) cccATTGGTAAC‑TGGCGGCGGAGCTACCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGAt < 2:9024032/71‑1 (MQ=255) ccAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGagg > 2:4938142/1‑70 (MQ=255) ccAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCCTG‑CCGCCGCCGAAA‑GCTGGGATGCCCCggggct > 2:1125735/1‑70 (MQ=255) cAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCCGAAA‑GCC‑GGAGGGCCCAGGGAgtt > 2:8455447/1‑72 (MQ=255) cAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGAttt < 1:6974515/72‑1 (MQ=255) cAGTGGAAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGAttt < 2:6861475/72‑1 (MQ=255) agggggAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTc < 1:8116384/69‑1 (MQ=255) aGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTc > 1:5298477/1‑72 (MQ=255) gTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTcc < 2:6129332/72‑1 (MQ=255) tGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTccc < 2:9163184/72‑1 (MQ=255) tGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCC‑GGATGGCCCAGGGATTTccc > 1:5547292/1‑72 (MQ=255) tGGGAAC‑TGGCGGCGGAGCCGCCGGAAATCCACCGTG‑GCGCCGCGGAAA‑ACG‑GGACGGCCCAGGGAGTTccc > 1:2403855/1‑72 (MQ=255) gggCAC‑GGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCca < 1:2793925/72‑1 (MQ=255) gggAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCca > 2:7519767/1‑72 (MQ=255) ggAAC‑TGGCGGCGGAGCTGCCGGAAAACCACCGTG‑CCGCCGCAGCAA‑GCC‑GGATGGCCCAGGGATTTCCcag > 1:1349028/1‑72 (MQ=255) aaC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcg < 2:7316031/72‑1 (MQ=255) aC‑TGGCGGCGGAGCCGCCCGAAAACCACCCCGCCCCCCCCCAAAA‑ACG‑GGAGGGCCCAGGGTTTGCCcagca > 2:6282606/1‑71 (MQ=255) ccgggcggcGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgc < 2:3546121/69‑1 (MQ=255) c‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgca < 2:7645608/72‑1 (MQ=255) ggggcggcGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgca < 1:222414/70‑1 (MQ=255) cgggcggcGGACCGGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgca < 2:8964721/70‑1 (MQ=255) ccggcggcGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgca < 2:6987617/70‑1 (MQ=255) tGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCCGGGAATTCCcagcgcag > 2:3773163/1‑72 (MQ=255) tGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgccg > 2:7052345/1‑70 (MQ=255) gggcggcGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCaagcgcag < 2:1584647/71‑1 (MQ=255) ggcgtcGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgcagc < 1:3790988/72‑1 (MQ=255) ggcggcGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgcagc < 1:6916551/72‑1 (MQ=255) ggcggcGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgcagc < 1:406293/72‑1 (MQ=255) gacggcggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCcagcgcagc < 2:8764864/70‑1 (MQ=255) gcggcgGAGCTGCCGGAAATCCACCGTG‑CCGCCCCAGAAA‑GCT‑GGATGGGCCAGGGATTTTCccgcgcagcg > 2:8077223/1‑72 (MQ=255) gggggACCTGCCGCAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGAt < 2:2905286/69‑1 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCCGCGAt > 2:5703027/1‑72 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCCGCGAt > 2:4201243/1‑72 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGac > 2:7673646/1‑71 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGAt < 1:6257188/72‑1 (MQ=255) gcggAGCTGCCGTGAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGAtt < 1:1915698/72‑1 (MQ=255) gcggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCCGCGagt > 1:1219545/1‑70 (MQ=255) cggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATtc < 2:4218344/72‑1 (MQ=255) cggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATtc > 1:4341085/1‑72 (MQ=255) ggAGCTGCCGGAAATCCACCGTG‑CCGCCGTAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATtca < 2:821948/72‑1 (MQ=255) ggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCNATtca > 2:410254/1‑72 (MQ=255) ggAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATtca > 1:8997310/1‑72 (MQ=255) gAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCCGCGAGtccg > 1:4890795/1‑70 (MQ=255) gAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATtcat > 2:3308562/1‑72 (MQ=255) gAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATtcat > 1:2329123/1‑72 (MQ=255) | CGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAAC‑TGGCGGCGGAGCTGCCGGAAATCCACCGTG‑CCGCCGCAGAAA‑GCT‑GGATGGCCCAGGGATTTCCCAGCGCAGCGATTCAT > NC_012967/3482629‑3482770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |